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Relevance to Autism

Heterozygous mutations in ZMYM2 were recently observed in 19 individuals presenting with a multisystem syndrome characterized by congenital anomalies of the kidney and urinary tract (CAKUT), cardiac defects, dysmorphic facial features, and/or neurological features, including 4 individuals with autism spectrum disorder and 2 others with stereotypy (Connaughton et al., 2020). Two de novo variants in ZMYM2 (one frameshift variant, one missense variant with a CADD score of 29.9) were reported in ASD probands from the SPARK cohort in Wang et al., 2020, while single-molecular molecular inversion probe (smMIP) sequencing of 125 genes in over 16,000 cases with neurodevelopmental disorders in the same report identified a number of ASD-associated likely gene-disruptive and missense variants with CADD scores 30, including a de novo frameshift variant in a proband from the Italian Autism Network (ITAN) cohort, in ZMYM2. A maternally-inherited likely gene-disruptive variant in ZMYM2 was transmitted to two of three ASD-affected siblings in a multiplex family from the iHART cohort in Russo et al., 2019.

Molecular Function

The protein encoded by this gene is a zinc finger protein that may act as a transcription factor. The encoded protein may be part of a BHC histone deacetylase complex.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Mutations of the Transcriptional Corepressor ZMYM2 Cause Syndromic Urinary Tract Malformations
Congenital anomalies of the kidney and urinary tra
ASD, DD, ID, stereotypy, epilepsy/seizures
Support
Prevalence and architecture of de novo mutations in developmental disorders
Developmental disorders
Support
Integrating de novo and inherited variants in 42
ASD
Support
Rare coding variants in ten genes confer substantial risk for schizophrenia
Schizophrenia
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Recent recommendation
Genome sequencing broadens the range of contributing variants with clinical implications in schizophrenia
SCZ

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1226R001 
 stop_gained 
 c.428C>T 
 p.Pro143Leu 
 Unknown 
  
  
 GEN1226R002 
 frameshift_variant 
 c.573_574dup 
 p.Thr192LysfsTer4 
 De novo 
  
  
 GEN1226R003 
 stop_gained 
 c.1192C>T 
 p.Gln398Ter 
 De novo 
  
  
 GEN1226R004 
 frameshift_variant 
 c.1174dup 
 p.Asp392GlyfsTer4 
 De novo 
  
  
 GEN1226R005 
 frameshift_variant 
 c.1413del 
 p.Glu472SerfsTer14 
 Unknown 
  
  
 GEN1226R006 
 stop_gained 
 c.1424C>T 
 p.Pro475Leu 
 De novo 
  
  
 GEN1226R007 
 stop_gained 
 c.1424C>T 
 p.Pro475Leu 
 Unknown 
  
  
 GEN1226R008 
 frameshift_variant 
 c.1429_1433del 
 p.Lys477CysfsTer4 
 De novo 
  
  
 GEN1226R009 
 stop_gained 
 c.2165T>A 
 p.Leu722Ter 
 Familial 
 Maternal 
  
 GEN1226R010 
 stop_gained 
 c.2338C>T 
 p.Arg780Ter 
 De novo 
  
  
 GEN1226R011 
 frameshift_variant 
 c.2240_2243del 
 p.Arg747IlefsTer40 
 De novo 
  
 Multiplex 
 GEN1226R012 
 splice_site_variant 
 c.2494-1G>A 
  
 Familial 
 Maternal 
 Multiplex 
 GEN1226R013 
 frameshift_variant 
 c.2936_2937dup 
 p.Gly980LeufsTer6 
 Unknown 
 Not paternal 
  
 GEN1226R014 
 frameshift_variant 
 c.2982dup 
 p.Met995HisfsTer3 
 De novo 
  
  
 GEN1226R015 
 stop_gained 
 c.3052G>A 
 p.Asp1018Asn 
 Familial 
 Maternal 
 Simplex 
 GEN1226R016 
 missense_variant 
 c.1925G>C 
 p.Cys642Ser 
 Unknown 
 Not maternal 
  
 GEN1226R017 
 stop_gained 
 c.3922G>T 
 p.Glu1308Ter 
 Familial 
 Maternal 
 Multiplex 
 GEN1226R018 
 frameshift_variant 
 c.1474del 
 p.Arg492AspfsTer14 
 De novo 
  
  
 GEN1226R019 
 missense_variant 
 c.3635C>T 
 p.Pro1212Leu 
 De novo 
  
  
 GEN1226R020 
 frameshift_variant 
 c.2175del 
 p.Thr726LeufsTer21 
 De novo 
  
  
 GEN1226R021 
 splice_site_variant 
 c.3301del 
 p.Ser1101LeufsTer4 
 Unknown 
  
 Simplex 
 GEN1226R022 
 frameshift_variant 
 c.1044del 
 p.Gly349AspfsTer32 
 Unknown 
  
  
 GEN1226R023 
 frameshift_variant 
 c.2134_2135del 
 p.Tyr712GlnfsTer23 
 Unknown 
  
  
 GEN1226R024 
 frameshift_variant 
 c.2624_2669del 
 p.Asp875ValfsTer48 
 Unknown 
  
  
 GEN1226R025 
 frameshift_variant 
 c.2827del 
 p.Ser943GlnfsTer11 
 Unknown 
  
  
 GEN1226R026 
 splice_site_variant 
 c.3369dup 
 p.His1124SerfsTer5 
 Unknown 
  
  
 GEN1226R027 
 stop_gained 
 c.1105C>T 
 p.Pro369Ser 
 Unknown 
  
  
 GEN1226R028 
 stop_gained 
 c.2083A>T 
 p.Asn695Tyr 
 Unknown 
  
  
 GEN1226R029 
 frameshift_variant 
 c.2899dup 
 p.Thr967AsnfsTer9 
 Unknown 
  
  
 GEN1226R030 
 frameshift_variant 
 c.2899dup 
 p.Thr967AsnfsTer9 
 Unknown 
  
  
 GEN1226R031 
 frameshift_variant 
 c.633del 
 p.Leu212Ter 
 Unknown 
  
  
 GEN1226R032 
 frameshift_variant 
 c.701del 
 p.Ser234Ter 
 Unknown 
  
  
 GEN1226R033 
 frameshift_variant 
 c.701del 
 p.Ser234Ter 
 Unknown 
  
  
 GEN1226R034 
 splice_site_variant 
 c.3370_3373del 
 p.His1124LeufsTer51 
 Unknown 
  
  
 GEN1226R035 
 missense_variant 
 c.4069C>T 
 p.Arg1357Trp 
 Unknown 
  
  
 GEN1226R036 
 missense_variant 
 c.2687C>T 
 p.Pro896Leu 
 Unknown 
  
  
 GEN1226R037 
 missense_variant 
 c.190G>A 
 p.Glu64Lys 
 Unknown 
  
  
 GEN1226R038 
 missense_variant 
 c.3758C>T 
 p.Thr1253Met 
 Unknown 
  
  
 GEN1226R039 
 frameshift_variant 
 c.977dup 
 p.Val327SerfsTer2 
 De novo 
  
  
 GEN1226R040 
 stop_gained 
 c.1960G>T 
 p.Glu654Ter 
 Unknown 
  
  
 GEN1226R041 
 frameshift_variant 
 c.2253dup 
 p.Glu752Ter 
 Unknown 
  
  
 GEN1226R042 
 frameshift_variant 
 c.763_766del 
 p.Gly255Ter 
 Unknown 
  
  
 GEN1226R043 
 splice_site_variant 
 c.3301+3_3301+6del 
  
 De novo 
  
 Simplex 
 GEN1226R044 
 synonymous_variant 
 c.3648G>C 
 p.Leu1216%3D 
 De novo 
  
  
 GEN1226R045 
 frameshift_variant 
 c.2584dup 
 p.Tyr862LeufsTer3 
 De novo 
  
  
 GEN1226R046 
 stop_gained 
 c.3118C>T 
 p.Arg1040Ter 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
13
Duplication
 3
 
13
Duplication
 1
 
13
Deletion
 1
 
13
Duplication
 1
 
13
Deletion-Duplication
 20
 
13
Deletion-Duplication
 3
 
13
Duplication
 2
 
13
N/A
 1
 
13
Deletion
 1
 
13
Duplication
 2
 

No Animal Model Data Available

 

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