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Relevance to Autism

A de novo frameshift variant and two de novo missense variants that were predicted to be damaging (CADD score > 30) were identified in ASD probands from the Autism Sequencing Consortium and the Simons Simplex Collection (De Rubeis et al., 2014; Iossifov et al., 2014). TADA analysis of 4,504 ASD trios and 3,012 unaffected control/siblings trios from trio-based exome/genome sequencing studies identified ZFYVE26 as an ASD candidate gene with a q-value < 0.1 (Du et al., 2019).

Molecular Function

This gene encodes a protein which contains a FYVE zinc finger binding domain. The presence of this domain is thought to target these proteins to membrane lipids through interaction with phospholipids in the membrane. Mutations in this gene are associated with autosomal recessive spastic paraplegia-15.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Recent Recommendation
Nonrandom occurrence of multiple de novo coding variants in a proband indicates the existence of an oligogenic model in autism.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1116R001 
 missense_variant 
 c.5173G>A 
 p.Ala1725Thr 
 De novo 
  
  
 GEN1116R002 
 missense_variant 
 c.6248G>A 
 p.Arg2083Gln 
 De novo 
  
 Simplex 
 GEN1116R003 
 frameshift_variant 
 c.1190del 
 p.Gly397AlafsTer93 
 De novo 
  
 Simplex 
 GEN1116R004 
 frameshift_variant 
 c.1201_1210del 
 p.Leu401MetfsTer86 
 Familial 
 Paternal 
 Multiplex 
 GEN1116R005 
 missense_variant 
 c.1311C>A 
 p.His437Gln 
 Unknown 
  
  
 GEN1116R006 
 synonymous_variant 
 c.1128C>T 
 p.His376%3D 
 Unknown 
  
  
 GEN1116R007 
 synonymous_variant 
 c.4548G>A 
 p.Ala1516%3D 
 De novo 
  
 Simplex 
 GEN1116R008 
 synonymous_variant 
 c.3450C>T 
 p.Asp1150%3D 
 De novo 
  
  
 GEN1116R009 
 splice_site_variant 
 c.1017+1G>T 
  
 Familial 
 Maternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
14
Duplication
 2
 
14
Deletion-Duplication
 7
 

No Animal Model Data Available

 

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