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Relevance to Autism

Two de novo frameshift variants in the ZC3H4 gene were identified in the same ASD proband from the Simons Simplex Collection in Iossifov et al., 2014.

Molecular Function

This gene encodes a member of a family of CCCH (C-x8-C-x5-C-x3-H type) zinc finger domain-containing proteins. These zinc finger domains, which coordinate zinc finger binding and are characterized by three cysteine residues and one histidine residue, are nucleic acid-binding. Other family members are known to function in post-transcriptional regulation.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
Support
Exonic Mosaic Mutations Contribute Risk for Autism Spectrum Disorder.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN875R001 
 frameshift_variant 
 c.1348del 
 p.Leu450CysfsTer21 
 De novo 
  
 Simplex 
 GEN875R002 
 frameshift_variant 
 c.1343del 
 p.Cys448LeufsTer23 
 De novo 
  
 Simplex 
 GEN875R003 
 missense_variant 
 c.2164G>A 
 p.Glu722Lys 
 De novo 
  
 Simplex 
 GEN875R004 
 missense_variant 
 c.1346A>T 
 p.Lys449Met 
 De novo 
  
 Simplex 
 GEN875R005 
 missense_variant 
 c.320G>A 
 p.Arg107Gln 
 De novo 
  
  
 GEN875R006 
 missense_variant 
 c.2050A>G 
 p.Met684Val 
 De novo 
  
  
 GEN875R007 
 missense_variant 
 c.319C>T 
 p.Arg107Trp 
 Familial 
 Maternal 
  
 GEN875R008 
 missense_variant 
 c.458G>A 
 p.Arg153His 
 Unknown 
  
  
 GEN875R009 
 missense_variant 
 c.757C>T 
 p.Arg253Cys 
 Unknown 
  
  
 GEN875R010 
 missense_variant 
 c.733C>T 
 p.Arg245Trp 
 Unknown 
  
  
 GEN875R011 
 missense_variant 
 c.619G>A 
 p.Asp207Asn 
 Unknown 
  
  
 GEN875R012 
 missense_variant 
 c.476G>T 
 p.Ser159Ile 
 Unknown 
  
  
 GEN875R013 
 stop_gained 
 c.507C>A 
 p.Tyr169Ter 
 Unknown 
  
  
 GEN875R014 
 missense_variant 
 c.353C>G 
 p.Ser118Trp 
 Unknown 
  
  
 GEN875R015 
 missense_variant 
 c.877G>A 
 p.Glu293Lys 
 Unknown 
  
  
 GEN875R016 
 missense_variant 
 c.556G>T 
 p.Asp186Tyr 
 Unknown 
  
  
 GEN875R017 
 missense_variant 
 c.332G>A 
 p.Arg111Gln 
 Unknown 
  
  
 GEN875R018 
 missense_variant 
 c.776G>A 
 p.Arg259His 
 Unknown 
  
  
 GEN875R019 
 missense_variant 
 c.776G>A 
 p.Arg259His 
 Unknown 
  
  
 GEN875R020 
 missense_variant 
 c.727C>T 
 p.Arg243Trp 
 Unknown 
  
  
 GEN875R021 
 missense_variant 
 c.424G>A 
 p.Asp142Asn 
 Unknown 
  
  
 GEN875R022 
 missense_variant 
 c.476G>T 
 p.Ser159Ile 
 Unknown 
  
  
 GEN875R023 
 missense_variant 
 c.707G>A 
 p.Arg236His 
 Unknown 
  
  
 GEN875R024 
 synonymous_variant 
 c.3891G>A 
 p.Thr1297%3D 
 De novo 
  
  
 GEN875R025 
 missense_variant 
 c.3500C>T 
 p.Thr1167Met 
 De novo 
  
  
 GEN875R026 
 missense_variant 
 c.2564C>T 
 p.Thr855Ile 
 De novo 
  
  
 GEN875R027 
 missense_variant 
 c.593A>C 
 p.Asn198Thr 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
19
Deletion-Duplication
 13
 
19
Duplication
 2
 

No Animal Model Data Available

 

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