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Relevance to Autism

Phenotypic information from 23 individuals with de novo mutations or deletions of the YY1 gene was used to identify an intellectual disability syndrome characterized by behavioral abnormalities, intrauterine growth retardation, feeding problems, recurrent dysmorphic features, and various congenital malformations; two of the ten individuals with de novo YY1 mutations presented with autism or ASD (Gabriele et al., 2017). YY1 had previously been shown to interact with MECP2 (Forlani et al., 2010) and HCFC1 (Huang et al., 2012).

Molecular Function

YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
YY1 Haploinsufficiency Causes an Intellectual Disability Syndrome Featuring Transcriptional and Chromatin Dysfunction.
ID
ASD
Support
The MeCP2/YY1 interaction regulates ANT1 expression at 4q35: novel hints for Rett syndrome pathogenesis.
Support
ADHD, ID
Support
Integrating de novo and inherited variants in 42
ASD
Support
DNA methylation episignature in Gabriele-de Vries syndrome
Gabriele-de Vries syndrome, DD, ID
ASD, ADHD, stereotypy
Support
Identification of De Novo JAK2 and MAPK7 Mutations Related to Autism Spectrum Disorder Using Whole-Exome Sequencing in a Chinese Child and Adolesce...
ASD
Support
Both rare and common genetic variants contribute to autism in the Faroe Islands.
ASD
Support
A noncoding, regulatory mutation implicates HCFC1 in nonsyndromic intellectual disability.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN910R001 
 missense_variant 
 c.1138G>T 
 p.Asp380Tyr 
 De novo 
  
  
 GEN910R002 
 missense_variant 
 c.1097T>C 
 p.Leu366Pro 
 De novo 
  
  
 GEN910R003 
 missense_variant 
 c.1096C>G 
 p.Leu366Val 
 De novo 
  
  
 GEN910R004 
 stop_gained 
 c.1030C>T 
 p.Gln344Ter 
 De novo 
  
  
 GEN910R005 
 stop_gained 
 c.535A>T 
 p.Lys179Ter 
 De novo 
  
  
 GEN910R006 
 frameshift_variant 
 c.1173del 
 p.Asn391LysfsTer10 
 De novo 
  
  
 GEN910R007 
 inframe_deletion 
 c.1177_1179del 
 p.Lys393del 
 De novo 
  
  
 GEN910R008 
 frameshift_variant 
 c.385del 
 p.Asp129IlefsTer127 
 De novo 
  
  
 GEN910R009 
 missense_variant 
 c.1015A>C 
 p.Lys339Gln 
 De novo 
  
  
 GEN910R010 
 missense_variant 
 c.958C>T 
 p.His320Tyr 
 De novo 
  
  
 GEN910R011 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN910R012 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN910R013 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN910R014 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN910R015 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN910R016 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN910R017 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN910R018 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN910R019 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN910R020 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN910R021 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN910R022 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN910R023 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN910R024 
 frameshift_variant 
 c.679_679+1insATGAAAAAAAAGATATTGACCATGAGACA 
 p.Val237MetfsTer29 
 Familial 
 Maternal 
 Simplex 
 GEN910R025 
 missense_variant 
 c.961G>A 
 p.Gly321Ser 
 De novo 
  
 Simplex 
 GEN910R026 
 missense_variant 
 c.1007A>G 
 p.Glu336Gly 
 De novo 
  
  
 GEN910R027 
 missense_variant 
 c.1112G>A 
 p.Arg371His 
 De novo 
  
  
 GEN910R028 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN910R029 
 missense_variant 
 c.1001T>C 
 p.Phe334Ser 
 De novo 
  
  
 GEN910R030 
 frameshift_variant 
 c.1151_1154dup 
 p.Pro386ValfsTer7 
 De novo 
  
  
 GEN910R031 
 missense_variant 
 c.1067C>T 
 p.Thr356Met 
 Familial 
 Paternal 
  
 GEN910R032 
 missense_variant 
  
 p.Val374Gly 
 De novo 
  
  
 GEN910R033 
 missense_variant 
  
 p.His320Arg 
 De novo 
  
  
 GEN910R034 
 missense_variant 
 c.527G>A 
 p.Gly176Asp 
 De novo 
  
  
 GEN910R035 
 frameshift_variant 
 c.690dup 
 p.Asp231ArgfsTer3 
 De novo 
  
  
 GEN910R036 
 missense_variant 
 c.1124G>A 
 p.Arg375Gln 
 De novo 
  
  
 GEN910R037 
 missense_variant 
 c.908G>T 
 p.Cys303Phe 
 De novo 
  
  
 GEN910R038 
 missense_variant 
 c.1135G>A 
 p.Gly379Arg 
 De novo 
  
  
 GEN910R039 
 splice_site_variant 
 c.1062+1G>A 
  
 De novo 
  
  
 GEN910R040 
 missense_variant 
 c.1036G>T 
 p.Val346Phe 
 Unknown 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
14
Duplication
 1
 
14
Duplication
 1
 
14
Deletion
 1
 
14
Duplication
 2
 
14
Duplication
 1
 
14
Duplication
 1
 
14
Deletion-Duplication
 22
 
14
Deletion
 1
 
14
Deletion
 6
 
14
Deletion
 1
 
14
Deletion
 4
 

No Animal Model Data Available

 

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