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Relevance to Autism

In XPO1, rs6735330 was associated with autism in all four cohorts (P<0.05), being significant in ASD-CARC cohorts (P-value following false discovery rate correction for multiple testing (P(FDR))=1.29 x 10(-5)), the AGRE cohort (P(FDR)=0.0011) and the combined families (P(FDR)=2.34 x 10(-9)). These results indicate that deletion 2p15-p16.1 is not commonly associated with idiopathic ASD, but represents a novel contiguous gene syndrome associated with a constellation of phenotypic features (autism, intellectual disability, craniofacial/CNS dysmorphology), and that XPO1 may contribute to ASD in 2p15-p16.1 deletion cases and non-deletion cases of ASD mapping to this chromosome region.

Molecular Function

The protein encoded by this gene mediates leucine-rich nuclear export signal (NES)-dependent protein transport. Exportin 1 specifically inhibits the nuclear export of Rev and U snRNAs. It is involved in the control of several cellular processes by controlling the localization of cyclin B, MPAK, and MAPKAP kinase 2. This protein also regulates NFAT and AP-1.

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References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
2p15-p16.1 microdeletion syndrome: molecular characterization and association of the OTX1 and XPO1 genes with autism spectrum disorders.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Inhibition of Autism-Related Crm1 Disrupts Mitosis and Induces Apoptosis of the Cortical Neural Progenitors.
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Support
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD
Support
Molecular and clinical delineation of 2p15p16.1 microdeletion syndrome.
Dysmorphic features
Motor delay, behavioral problems
Support
Identifying candidate genes for 2p15p16.1 microdeletion syndrome using clinical, genomic, and functional analysis.
Support
Haploinsufficiency of XPO1 and USP34 by a de novo 230kb deletion in 2p15, in a patient with mild intellectual disability and cranio-facial dysmorp...
ID

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN377R001 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN377R002 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN377R003 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN377R004 
 missense_variant 
 c.579T>G 
 p.His193Gln 
 De novo 
  
 Multiplex 
 GEN377R005 
 copy_number_gain 
  
  
 De novo 
  
  
 GEN377R006a 
 missense_variant 
 c.1927G>A 
 p.Ala643Thr 
 De novo 
  
  
 GEN377R006b 
 missense_variant 
 c.1467G>C 
 p.Trp489Cys 
 De novo 
  
  
 GEN377R007 
 missense_variant 
 c.656C>T 
 p.Ala219Val 
 De novo 
  
  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN377C001 
 intron_variant 
 rs6735330 
 c.302-2033C>T;c.104-2033C>T;c.-92-2033C>T;c.-93-4449C>T;c.-2022-2033C>T 
  
 Three North American ASD cohorts (ASD-CARC, New York, and AGRE) and one Italian ASD cohort (SIRFA) 
 Discovery 
 GEN377C002 
 intron_variant 
 rs6735330 
 c.302-2033C>T;c.104-2033C>T;c.-92-2033C>T;c.-93-4449C>T;c.-2022-2033C>T 
  
 Three North American ASD cohorts (ASD-CARC, New York, and AGRE) and one Italian ASD cohort (SIRFA) 
 Replication 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Deletion-Duplication
 18
 
2
Deletion
 1
 
2
Deletion
 10
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
APC adenomatous polyposis coli 324 P25054 Affinity chromatography
Tickenbrock L , et al. 2002
APLNR Apelin receptor 187 P35414 IP; LC-MS/MS
Huttlin EL , et al. 2015
CHD8 chromodomain helicase DNA binding protein 8 57680 Q9HCK8 CHIP-seq
Cotney J , et al. 2015
FAT1 FAT tumor suppressor homolog 1 (Drosophila) 14107 F2Z4A3 IP; LC-MS/MS
Badouel C , et al. 2015
LPAR4 Lysophosphatidic acid receptor 4 2846 Q99677 IP; LC-MS/MS
Huttlin EL , et al. 2015
TOP3B topoisomerase (DNA) III beta 8940 O95985 HITS-CLIP
Xu D , et al. 2013

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