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Relevance to Autism

De novo missense variants in the WDFY4 gene have been identified in four probands with ASD (Iossifov et al., 2014; Yuen et al., 2016; Yuen et al., 2017) and one proband with an unspecified developmental disorder (Deciphering Developmental Disorders Study 2017). An integrated meta-analysis of de novo mutation data from a combined dataset of 10,927 individuals with neurodevelopmental disorders identified WDFY4 as a gene with an excess of missense variants (false discovery rata < 5%, count >1); WDFY4 was similarly identified as a gene with an excess of de novo missense variants (false discovery rata < 5%, count >1) following analysis of 5,624 cases with a primary diagnosis of ASD (Coe et al., 2018).

Molecular Function

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Genome-wide characteristics of de novo mutations in autism
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
A recurrent PJA1 variant in trigonocephaly and neurodevelopmental disorders
ASD, DD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Prevalence and architecture of de novo mutations in developmental disorders
DD
Recent Recommendation
Neurodevelopmental disease genes implicated by de novo mutation and copy number variation morbidity.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1065R001 
 missense_variant 
 c.5387C>A 
 p.Ala1796Asp 
 De novo 
  
 Simplex 
 GEN1065R002 
 missense_variant 
 c.7546C>A 
 p.Leu2516Met 
 De novo 
  
 Simplex 
 GEN1065R003 
 missense_variant 
 c.8519C>T 
 p.Pro2840Leu 
 De novo 
  
 Simplex 
 GEN1065R004 
 missense_variant 
 c.908C>T 
 p.Ser303Leu 
 De novo 
  
 Multiplex 
 GEN1065R005 
 missense_variant 
 c.7414C>T 
 p.Arg2472Trp 
 De novo 
  
  
 GEN1065R006 
 frameshift_variant 
 c.4915del 
 p.Thr1639ProfsTer6 
 Familial 
 Paternal 
 Multiplex 
 GEN1065R007 
 missense_variant 
 c.1454T>A 
 p.Met485Lys 
 De novo 
  
 Simplex 
 GEN1065R008 
 missense_variant 
 c.7328C>T 
 p.Pro2443Leu 
 Unknown 
  
  
 GEN1065R009 
 missense_variant 
 c.445G>A 
 p.Gly149Arg 
 Unknown 
  
  
 GEN1065R010 
 missense_variant 
 c.2619C>A 
 p.Asn873Lys 
 De novo 
  
  
 GEN1065R011 
 missense_variant 
 c.5941C>G 
 p.Pro1981Ala 
 De novo 
  
  
 GEN1065R012 
 splice_region_variant 
 c.7001-6C>A 
  
 De novo 
  
  
 GEN1065R013 
 synonymous_variant 
 c.2757G>A 
 p.Pro919%3D 
 De novo 
  
 Simplex 
 GEN1065R014 
 synonymous_variant 
 c.7968C>T 
 p.Cys2656%3D 
 De novo 
  
  
 GEN1065R015 
 missense_variant 
 c.4040T>G 
 p.Ile1347Ser 
 De novo 
  
 Simplex 
 GEN1065R016 
 splice_site_variant 
 c.972-1G>T 
  
 Familial 
 Paternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
10
Duplication
 4
 
10
Deletion
 1
 
10
Deletion-Duplication
 23
 
10
Duplication
 17
 
10
Duplication
 3
 

No Animal Model Data Available

No PIN Data Available
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