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Relevance to Autism

Transmission And De Novo Association (TADA) analysis of whole-genome sequencing data from a cohort of 4,551 individuals in 1,004 multiplex families having two or more autistic children identified VPS54 as a novel ASD risk gene with a false discovery rate (FDR) less than 0.1. Additional de novo variants in this gene, including a missense variant and a splice-region variant, have been identified in ASD probands from the Autism Sequencing Consortium (De Rubeis et al., 2014; Satterstrom et al., 2020).

Molecular Function

This gene encodes for a protein that in yeast forms part of a trimeric vacuolar-protein-sorting complex that is required for retrograde transport of proteins from prevacuoles to the late Golgi compartment. As in yeast, mammalian Vps54 proteins contain a coiled-coil region and dileucine motifs.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1416R001 
 splice_site_variant 
 c.2129-2A>G 
  
 Familial 
 Maternal 
 Multiplex 
 GEN1416R002 
 frameshift_variant 
 c.1179_1182del 
 p.Arg393SerfsTer5 
 De novo 
  
 Multiplex 
 GEN1416R003 
 missense_variant 
 c.2930G>T 
 p.Arg977Met 
 De novo 
  
  
 GEN1416R004 
 splice_region_variant 
 c.1209+7A>G 
  
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Deletion-Duplication
 14
 
2
Deletion-Duplication
 18
 
2
Deletion-Duplication
 2
 
2
Deletion
 1
 
2
Deletion
 10
 

No Animal Model Data Available

 

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