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Relevance to Autism

Polymorphisms in the VDR gene have been shown to nominally associate with ASD in multiple populations (Schmidt et al., 2015; Coskun et al., 2016; Bojovic et al., 2017; Cieslinska et al., 2017; Zhang et al., 2018). Serum levels of 25-hydroxyvitamin D were found to be significantly higher in ASD cases, and the FokI polymorphism was observed to have a significant effect on serum 25-hydroxyvitamin D levels in children with ASD, in Coskun et al., 2016. Whole blood VDR gene expression was found to be significantly higher in a cohort of 30 age and gender matched patients diagnosed with ASD compared to a cohort of 30 healthy controls (p < 0.0001) (Balta et al., 2018).

Molecular Function

Nuclear receptor for calcitriol, the active form of vitamin D3 which mediates the action of this vitamin on cells. Enters the nucleus upon vitamin D3 binding where it forms heterodimers with the retinoid X receptor/RXR. The VDR-RXR heterodimers bind to specific response elements on DNA and activate the transcription of vitamin D3-responsive target genes. Recruited to promoters via its interaction with BAZ1B/WSTF which mediates the interaction with acetylated histones, an essential step for VDR-promoter association. Plays a central role in calcium homeostasis.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Selected vitamin D metabolic gene variants and risk for autism spectrum disorder in the CHARGE Study.
ASD
Positive Association
Polymorphisms in Vitamin D Receptor Genes in Association with Childhood Autism Spectrum Disorder.
ASD
Positive Association
Vitamin D Receptor Gene Polymorphisms Associated with Childhood Autism.
ASD
Positive Association
Genetic predictors of celiac disease, lactose intolerance, and vitamin D function and presence of peptide morphins in urine of children with neurod...
ASD
Positive Association
Association of polymorphisms in the vitamin D receptor gene and serum 25-hydroxyvitamin D levels in children with autism spectrum disorder.
ASD
Positive association
Vitamin D Receptor Polymorphisms Associated with Autism Spectrum Disorder.
ASD
Positive association
The Correlation Between Vitamin D Receptor (VDR) Gene Polymorphisms and Autism: A Meta-analysis.
ASD
Positive association
Association between vitamin D receptor gene FokI and TaqI variants with autism spectrum disorder predisposition in Iranian population.
ASD
Negative Association
No Association between Polymorphisms of Vitamin D and Oxytocin Receptor Genes and Autistic Spectrum Disorder in a Sample of Turkish Children.
ASD
Support
Increased vitamin D receptor gene expression and rs11568820 and rs4516035 promoter polymorphisms in autistic disorder.
ASD

Rare

No Rare Variants Available

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN1051C001 
 synonymous_variant 
 rs731236 
 c.1056T>C;c.1206T>C 
 p.(=) 
 384 ASD families and 234 families of typically developing children (CHARGE) 
 Discovery 
 GEN1051C002 
 intron_variant 
 rs1544410 
 c.1024+283G>A 
  
 237 ASD cases (195 males, 42 females; mean age 51.1 33.8 months) and 243 controls (205 males, 38 females; mean age 49.07 17.2 months) from the southeastern region of Turkey 
 Discovery 
 GEN1051C003 
 synonymous_variant 
 rs731236 
 c.1056T>C;c.1206T>C 
 p.(=) 
 237 ASD cases (195 males, 42 females; mean age 51.1 33.8 months) and 243 controls (205 males, 38 females; mean age 49.07 17.2 months) from the southeastern region of Turkey 
 Discovery 
 GEN1051C004 
 missense_variant 
 rs2228570 
 c.2T>C;c.152T>C 
 p.Met1Thr;p.Met51Thr 
 237 ASD cases (195 males, 42 females; mean age 51.1 33.8 months) and 243 controls (205 males, 38 females; mean age 49.07 17.2 months) from the southeastern region of Turkey 
 Discovery 
 GEN1051C005 
 missense_variant 
 rs2228570 
 c.2T>C;c.152T>C 
 p.Met1Thr;p.Met51Thr 
 21 cases with childhood autism (21 male; median age 5 years) and 95 controls (73 male, 22 female; median age 5 years) from Serbia and Croatia 
 Replication 
 GEN1051C006 
 synonymous_variant 
 rs731236 
 c.1056T>C;c.1206T>C 
 p.(=) 
 108 ASD cases (91 male, 17 female; mean age 6.8 years) and 196 controls (98 male, 98 female; mean age 8.5 years) from Poland 
 Replication 
 GEN1051C007 
 intron_variant 
 rs7975232 
 c.1025-49G>T;c.1175-49G>T 
  
 108 ASD cases (91 male, 17 female; mean age 6.8 years) and 196 controls (98 male, 98 female; mean age 8.5 years) from Poland 
 Discovery 
 GEN1051C008 
 synonymous_variant 
 rs731236 
 c.1056T>C;c.1206T>C 
 p.(=) 
 201 ASD cases and 200 controls from the Han Chinese population 
 Replication 
 GEN1051C009 
 synonymous_variant 
 rs731236 
 c.1056T>C;c.1206T>C 
 p.(=) 
 81 ASD cases and 108 healthy controls from the Iranian population 
 Discovery 
 GEN1051C010 
 synonymous_variant 
 rs731236 
 c.1056T>C;c.1206T>C 
 p.(=) 
 Meta-analysis consisting of 6 eligible studies with a total of 2001 participants (1045 cases and 956 controls) 
 Meta-analysis 
 GEN1051C011 
 intron_variant 
 rs7975232 
 c.1025-49G>T;c.1175-49G>T 
  
 Meta-analysis consisting of 6 eligible studies with a total of 2001 participants (1045 cases and 956 controls) 
 Meta-analysis 
 GEN1051C012 
 missense_variant 
 rs2228570 
 c.2T>C;c.152T>C 
 p.Met1Thr;p.Met51Thr 
 100 Italian children with a DSM-5 diagnosis of ASD, 46 healthy siblings, 82 mothers, and 79 fathers 
 Replication 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
12
Duplication
 1
 
12
Deletion-Duplication
 7
 

No Animal Model Data Available

 

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