HELP     Sign In
Search

Relevance to Autism

De novo variants (six multigenic deletions, one nonsense variant) affecting the USP7 gene were identified in seven patients presenting with developmental delay/intellectual disability, with five of these cases having an additional diagnosis of ASD (Hao et al., 2015). Subsequent statistical analysis determined that there was a strong correlation between the seven patients having both a de novo USP7 variant and the expressed phenotype that was likely not due to chance (p<0.0001).

Molecular Function

Hydrolase that deubiquitinates target proteins such as FOXO4, p53/TP53, MDM2, ERCC6, DNMT1, UHRF1, PTEN and DAXX. Together with DAXX, prevents MDM2 self-ubiquitination and enhances the E3 ligase activity of MDM2 towards p53/TP53, thereby promoting p53/TP53 ubiquitination and proteasomal degradation. Deubiquitinates p53/TP53 and MDM2 and strongly stabilizes p53/TP53 even in the presence of excess MDM2, and also induces p53/TP53-dependent cell growth repression and apoptosis. In association with DAXX, is involved in the deubiquitination and translocation of PTEN from the nucleus to the cytoplasm. Involved in cell proliferation during early embryonic development.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
USP7 Acts as a Molecular Rheostat to Promote WASH-Dependent Endosomal Protein Recycling and Is Mutated in a Human Neurodevelopmental Disorder.
ASD, DD, ID
Epilepsy/seizures
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Role of the DUB enzyme USP7 in dendritic arborization
ASD
Support
Hao-Fountain syndrome, DD
Autistic features
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Hao-Fountain syndrome
ASD
Support
A clinical utility study of exome sequencing versus conventional genetic testing in pediatric neurology.
Psychomotor retardation
Support
Hao-Fountain Syndrome, ADHD, DD, ID
Support
Meta-analysis of 2,104 trios provides support for 10 new genes for intellectual disability
ID
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Expansion of the mutation spectrum and phenotype of USP7-related neurodevelopmental disorder
DD
Autistic behavior
Recent Recommendation
Pathogenic variants in USP7 cause a neurodevelopmental disorder with speech delays, altered behavior, and neurologic anomalies.
DD, ID, speech delay
ASD, ADHD, epilepsy/seizures
Recent Recommendation
Low load for disruptive mutations in autism genes and their biased transmission.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN758R001 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN758R002 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN758R003 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN758R004 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN758R005 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN758R006 
 stop_gained 
 c.429C>G 
 p.Tyr143Ter 
 De novo 
  
  
 GEN758R007 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN758R008 
 missense_variant 
 c.1243A>G 
 p.Thr415Ala 
 De novo 
  
  
 GEN758R009 
 missense_variant 
 c.1969C>G 
 p.Pro657Ala 
 De novo 
  
 Simplex 
 GEN758R010 
 frameshift_variant 
 c.2196dup 
 p.Tyr733LeufsTer2 
 De novo 
  
  
 GEN758R011 
 missense_variant 
 c.3017C>T 
 p.Pro1006Leu 
 De novo 
  
  
 GEN758R012 
 missense_variant 
 c.1258A>G 
 p.Lys420Glu 
 De novo 
  
  
 GEN758R013 
 frameshift_variant 
 c.2244dup 
 p.Tyr749LeufsTer2 
 De novo 
  
  
 GEN758R014 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN758R015 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN758R016 
 stop_gained 
 c.1728T>A 
 p.Cys576Ter 
 De novo 
  
  
 GEN758R017 
 frameshift_variant 
 c.1708dup 
 p.Glu570GlyfsTer19 
 De novo 
  
  
 GEN758R018 
 frameshift_variant 
 c.2140_2141del 
 p.Thr714Ter 
 De novo 
  
  
 GEN758R019 
 missense_variant 
 c.2297T>C 
 p.Ile766Thr 
 De novo 
  
  
 GEN758R020 
 missense_variant 
 c.675G>A 
 p.Met225Ile 
 De novo 
  
  
 GEN758R021 
 missense_variant 
 c.1117C>T 
 p.Leu373Phe 
 De novo 
  
  
 GEN758R022 
 missense_variant 
 c.1105G>A 
 p.Gly369Ser 
 De novo 
  
  
 GEN758R023 
 missense_variant 
 c.3238G>A 
 p.Asp1080Asn 
 De novo 
  
  
 GEN758R024 
 missense_variant 
 c.1384T>G 
 p.Cys462Gly 
 De novo 
  
  
 GEN758R025 
 missense_variant 
 c.1033G>A 
 p.Glu345Lys 
 De novo 
  
  
 GEN758R026 
 missense_variant 
 c.2241T>C 
 p.Gly747= 
 De novo 
  
  
 GEN758R027 
 splice_site_variant 
 c.3174G>T 
 p.Arg1058= 
 De novo 
  
  
 GEN758R028 
 splice_site_variant 
 c.3174G>T 
 p.Arg1058= 
 De novo 
  
  
 GEN758R029 
 splice_site_variant 
 c.314G>A 
 p.Cys105Tyr 
 De novo 
  
  
 GEN758R030 
 stop_gained 
 c.1041T>G 
 p.Tyr347Ter 
 Unknown 
  
  
 GEN758R031 
 synonymous_variant 
 c.2823G>T 
 p.Leu941%3D 
 De novo 
  
  
 GEN758R032 
 frameshift_variant 
 c.247_250del 
 p.Glu83ArgfsTer18 
 De novo 
  
 Simplex 
 GEN758R033 
 missense_variant 
 c.992A>G 
 p.Tyr331Cys 
 De novo 
  
 Simplex 
 GEN758R034 
 missense_variant 
 c.835T>G 
 p.Leu279Val 
 De novo 
  
 Simplex 
 GEN758R035 
 missense_variant 
 c.863T>C 
 p.Leu288Ser 
 De novo 
  
 Simplex 
 GEN758R036 
 stop_gained 
 c.715C>T 
 p.Arg239Ter 
 Unknown 
  
 Unknown 
  et al.  
 GEN758R037 
 missense_variant 
 c.2697A>C 
 p.Leu899Phe 
 De novo 
  
 Simplex 
  et al.  
 GEN758R038 
 missense_variant 
 c.3305A>C 
 p.Asn1102Thr 
 Familial 
 Maternal 
 Extended multiplex 
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
16
Deletion-Duplication
 42
 
16
Deletion
 4
 
16
Duplication
 3
 
16
Deletion-Duplication
 2
 
16
Deletion
 5
 

Model Summary

Usp7 null mutation is embryonic lethal and leads to resorption of embryos at around E6.5.

References

Type
Title
Author, Year
Primary
Inactivation of HAUSP in vivo modulates p53 function.
Additional
Role of the DUB enzyme USP7 in dendritic arborization

M_USP7_1_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: An IRES-lacZ-neo cassette is inserted into exon 14 of USP7 leading to the deletion of the first 29 nucleotides of exon 14 and resulting in a frameshift mutation. This C terminal truncated protein is unstable and not detectable (PMID 19946331).
Allele Type: Targeted (reporter, knockout)
Strain of Origin:
Genetic Background: 129Sv * C57BL/6
ES Cell Line:
Mutant ES Cell Line:
Model Source: PMID 19946331

M_USP7_2_OE

Model Type: Genetic
Model Genotype: Wildtype
Mutation: Transgene delivered through AAV vector through bilateral intracerebroventricular (ICV) injections performed in FVB/NJ wildtype mouse, on postnatal day 0 (P0).
Allele Type: Overexpression
Strain of Origin:
Genetic Background: FVB/NJ
ES Cell Line:
Mutant ES Cell Line:
Model Source: Jackson Laboratory

M_USP7_3_OE

Model Type: Genetic
Model Genotype: Wildtype
Mutation: Transgene delivered through AAV vector through In utero electroporation (IUE) performed on timed pregnant CD-1 dams at embryonic day 14.5 (E14.5).
Allele Type: Overexpression
Strain of Origin:
Genetic Background: CD-1
ES Cell Line:
Mutant ES Cell Line:
Model Source: Charles River Laboratory

M_USP7_1_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Mortality/lethality: embryonic1
Increased
Description: No usp7 homozygous knockout mutant pups are recovered at birth revealing that null mutations in usp7 leads to embryonic lethality
Exp Paradigm: NA
 Survival analysis
 E6.5-e7.5
Developmental trajectory1
Decreased
Description: By e6.5 usp7 null embryos appear to be smaller with impaired patterning and at e7.5 , unlike controls, they show no recognizable structures
Exp Paradigm: NA
 Histology
 E6.5-e7.5
Targeted expression1
Decreased
Description: The expected c-terminal truncated usp7 protein is not detected in protein extracts from usp7 null embryos
Exp Paradigm: NA
 Western blot
 E8.5
Cell proliferation1
Decreased
Description: Reduced cell proliferation is observed in e7.5 embryos, using brdu labeling, which authors suggest is at least partially responsible for embryonic lethality
Exp Paradigm: NA
 Immunostaining
 E7.5
Apoptosis1
 No change
 Tunel assay
 E6.5-e7.5
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Motor phenotype, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_USP7_2_OE

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
General locomotor activity1
Increased
Description: Mice injected with Usp7 virus showed increased overall activity levels, assessed by grooming, rearing, digging, climbing, circling and jumping compared to the controls.
 Home cage behavior
 5 weeks
Dendritic architecture: dendritic tree complexity1
Increased
Description: Layer V cortical neurons in the somatosensory cortex of AAV Usp7 mice showed more complex dendritic arborization compared to controls.
 Sholl analysis
 4-8 weeks
Dendritic architecture: dendritic length1
Increased
Description: Layer V cortical neurons in the somatosensory cortex of AAV Usp7 mice showed longer dendrites compared to controls.
 Sholl analysis
 4-8 weeks
Repetitive digging1
Increased
Description: Mice injected with Usp7 virus buried significantly more marbles than controls during a 30 min episode.
 Marble-burying test
 6 weeks
Self grooming1
Increased
Description: Mice injected with Usp7 virus showed increased grooming activity compared to the controls.
 Home cage behavior
 5 weeks
Repetitive digging1
Increased
Description: Mice injected with Usp7 virus showed increased digging activity compared to the controls.
 Home cage behavior
 5 weeks
Pain or nociception: thermal1
Increased
Description: The USP7 mice showed a shorter hind paw withdrawal latency compared to the control mice.
 Hot plate test
 5 weeks
Social approach1
Increased
Description: Although both the USP7 mice and the control mice spent a significantly longer time in the stranger-containing chamber than the empty chamber, USP7 mice showed a higher score in the preference index.
 Three-chamber social approach test
 7 weeks
Targeted expression1
Increased
Description: Stronger expression of Usp7 was observed in layer III and layer V in the cortex, and significantly higher in AAV-USP7 groups compared to controls; the level of Xiap was also increased in the brains of mice injected with Usp7 virus.
 Western blot
 4-8 weeks
Object recognition memory1
 No change
 Novel object recognition test
 6 weeks
General locomotor activity: ambulatory activity1
 No change
 Open field test
 5 weeks
Rearing behavior1
 No change
 Home cage behavior
 5 weeks
Circling1
 No change
 Home cage behavior
 5 weeks
Stereotypy: climbing1
 No change
 Home cage behavior
 5 weeks
Vertical jumping or back flipping1
 No change
 Home cage behavior
 5 weeks
Social memory1
 No change
 Three-chamber social approach test
 7 weeks
 Not Reported:

M_USP7_3_OE

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Dendritic architecture: dendritic tree complexity1
Increased
Description: Neurons electroporated with Usp7 showed a significant increase in dendritic arborization.
 Sholl analysis
 2 weeks
Dendritic architecture: dendritic length1
Increased
Description: Layer V cortical neurons in the somatosensory cortex of AAV Usp7 mice showed more complex dendritic arborization compared to controls.
 Sholl analysis
 2 weeks
Neuronal migration1
Decreased
Description: Cortical slices show a decrease in upper layer neuronal number and increase in lower layer and ventricular zone neuronal number for Usp7 neurons.
 Fluorescence microscopy
 P0
 Not Reported:


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
ACD Adrenocortical dysplasia protein homolog 65057 Q96AP0 IP; LC-MS/MS
Huttlin EL , et al. 2015
ARHGEF6 Rho guanine nucleotide exchange factor 6 9459 Q15052-2 IP; LC-MS/MS
Huttlin EL , et al. 2015
ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 51329 Q66PJ3-2 IP; LC-MS/MS
Huttlin EL , et al. 2015
ARNT2 aryl-hydrocarbon receptor nuclear translocator 2 9915 Q9HBZ2 Y2H
Lim J , et al. 2006
C14ORF179 Intraflagellar transport protein 43 homolog 112752 Q96FT9-2 IP; LC-MS/MS
Huttlin EL , et al. 2015
CCDC41 coiled-coil domain containing 41 51134 J3KNW7 IP; LC-MS/MS
Huttlin EL , et al. 2015
CUL3 cullin 3 8452 B7Z600 IP; MS; COMPASS
Bennett EJ , et al. 2010
ERCC3 excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing) 2071 P19447 IP; LC-MS/MS
Huttlin EL , et al. 2015
FAM170A Protein FAM170A 340069 A1A519-2 IP; LC-MS/MS
Huttlin EL , et al. 2015
GAS2L1 VASH1 10634 A0A5E8 IP; LC-MS/MS
Huttlin EL , et al. 2015
GTF2I general transcription factor IIi 2969 P78347 IP; LC-MS/MS
Sowa ME , et al. 2009
KHDRBS2 KH domain containing, RNA binding, signal transduction associated 2 202559 Q5VWX1 IP; LC-MS/MS
Huttlin EL , et al. 2015
KMT2E lysine (K)-specific methyltransferase 2E 55904 Q8IZD2 IP/WB; Co-localization; Size-exclusion chromatography (SEC); IP; LC-MS/MS
Ding X , et al. 2015
LCOR ligand dependent nuclear receptor corepressor 84458 Q96JN0 IP; LC-MS/MS
Huttlin EL , et al. 2015
MAGEL2 MAGE-like 2 54551 Q9UJ55 TAP; MS; IP/WB
Hao YH , et al. 2013
MAGEL2 MAGE-like 2 54551 Q9UJ55 in vitro binding assay; IP/WB
Hao YH , et al. 2015
MEAF6 MYST/Esa1-associated factor 6 64769 Q9HAF1 IP; LC-MS/MS
Huttlin EL , et al. 2015
NKAP NFKB activating protein 79576 Q8N5F7 IP; LC-MS/MS
Huttlin EL , et al. 2015
NUAK2 NUAK family, SNF1-like kinase, 2 NM_030952 Q9H093 IP; LC-MS/MS
Huttlin EL , et al. 2015
OGT O-linked N-acetylglucosamine (GlcNAc) transferase 8473 O15294 IP/WB; Co-localization; Size-exclusion chromatography (SEC)
Ding X , et al. 2015
PAK7 p21 protein (Cdc42/Rac)-activated kinase 7 57144 B0AZM9 IP; LC-MS/MS
Huttlin EL , et al. 2015
PCGF6 polycomb group ring finger 6 84108 Q9BYE7 IP; LC-MS/MS
Huttlin EL , et al. 2015
PHF7 PHD finger protein 7 51533 Q9BWX1 IP; LC-MS/MS
Huttlin EL , et al. 2015
PJA1 praja ring finger 1, E3 ubiquitin protein ligase 64219 A2A322 IP; LC-MS/MS
Huttlin EL , et al. 2015
PLEKHG5 pleckstrin homology domain containing, family G (with RhoGef domain) member 5 57449 O94827 IP; LC-MS/MS
Huttlin EL , et al. 2015
PLEKHO1 pleckstrin homology domain containing, family O member 1 51177 Q53GL0 IP; LC-MS/MS
Huttlin EL , et al. 2015
POTEB POTE ankyrin domain family member B 102724631 Q6S5H4 IP; LC-MS/MS
Huttlin EL , et al. 2015
POTEC POTE ankyrin domain family member C 388468 B2RU33-2 IP; LC-MS/MS
Huttlin EL , et al. 2015
RBPJ recombination signal binding protein for immunoglobulin kappa J region 3516 Q06330 IP; LC-MS/MS
Huttlin EL , et al. 2015
RSBN1 round spermatid basic protein 1 54665 Q5VWQ0 IP; LC-MS/MS
Huttlin EL , et al. 2015
RYBP RING1 and YY1 binding protein 23429 Q8N488 IP; LC-MS/MS
Huttlin EL , et al. 2015
TCEAL1 Transcription elongation factor A protein-like 1 9338 Q15170-2 IP; LC-MS/MS
Huttlin EL , et al. 2015
TCF25 transcription factor 25 (basic helix-loop-helix) 22980 Q9BQ70 IP; LC-MS/MS
Huttlin EL , et al. 2015
TOP3B topoisomerase (DNA) III beta 8940 O95985 HITS-CLIP
Xu D , et al. 2013
TRIM35 tripartite motif containing 35 23087 Q9UPQ4 IP; LC-MS/MS
Huttlin EL , et al. 2015
TRIP12 thyroid hormone receptor interactor 12 9320 Q14669 IP; MS; COMPASS
Sowa ME , et al. 2009
TSEN15 tRNA splicing endonuclease 15 homolog (S. cerevisiae) 116461 Q8WW01 IP; LC-MS/MS
Huttlin EL , et al. 2015
TULP3 tubby like protein 3 7289 F8WBZ9 IP; LC-MS/MS
Huttlin EL , et al. 2015
UBE2E3 ubiquitin-conjugating enzyme E2E 3 10477 Q969T4 IP; LC-MS/MS
Huttlin EL , et al. 2015
YAF2 YY1 associated factor 2 10138 Q8IY57 IP; LC-MS/MS
Huttlin EL , et al. 2015
ZBTB44 zinc finger and BTB domain containing 44 29068 Q8NCP5 IP; LC-MS/MS
Huttlin EL , et al. 2015

HELP
Copyright © 2017 MindSpec, Inc.