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Relevance to Autism

Genome sequencing of 50 ASD probands and their unaffected parents from a Qatari cohort in Ben-Mahmoud et al., 2024 identified a de novo missense variant in the USP24 gene that was not in gnomAD or the Qatar Genome Project and was predicted to be damaging with a CADD score of 28.2 in a male ASD proband. Five de novo missense variants (four of which had CADD scores > 25) and three de novo coding-synonymous variants in the USP24 gene were previously identified in ASD probands (Iossifov et al., 2014; Satterstrom et al., 2020; Zhou et al., 2022; Fu et al., 2022; Yuan et al., 2023).

Molecular Function

Modification of cellular proteins by ubiquitin is an essential regulatory mechanism controlled by the coordinated action of multiple ubiquitin-conjugating and deubiquitinating enzymes. USP24 belongs to a large family of cysteine proteases that function as deubiquitinating enzymes. A number of studies have suggested an association between the USP24 gene, which lies within the PARK10 locus, and Parkinson disease (Oliveira et al., 2005; Li et al, 2006, Haugarvoll et al., 2009; Wu et al., 2010).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Genome Sequencing Identifies 13 Novel Candidate Risk Genes for Autism Spectrum Disorder in a Qatari Cohort
ASD
DD
Positive Association
Ubiquitin specific proteases USP24 and USP40 and ubiquitin thiolesterase UCHL1 polymorphisms have synergic effect on the risk of Parkinson's disease among Taiwanese
Parkinson disease
Positive Association
Fine-mapping and candidate gene investigation within the PARK10 locus
Parkinson disease
Positive Association
Genetic evidence for ubiquitin-specific proteases USP24 and USP40 as candidate genes for late-onset Parkinson disease
Parkinson disease
Positive Association
Identification of risk and age-at-onset genes on chromosome 1p in Parkinson disease
Parkinson disease
Negative Association
Association mapping of the PARK10 region for Parkinson's disease susceptibility genes
Parkinson disease
Negative Association
Association analysis of single-nucleotide polymorphisms of USP24 and USP40 with Parkinson's disease in the Han Chinese population
Parkinson disease
Support
Rare coding variation provides insight into the genetic architecture and phenotypic context of autism
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
A De Novo USP24 Variant as a Candidate Driver in a Neurodevelopmental Disorder: Insights from Trio-Based Whole-Exome Sequencing.
ASD, epilepsy/seizures
Support
Deleterious coding variation associated with autism is shared across ancestries.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1482R001 
 missense_variant 
 c.70C>G 
 p.Arg24Gly 
 De novo 
  
 Simplex 
 GEN1482R002 
 missense_variant 
 c.3497C>T 
 p.Ala1166Val 
 De novo 
  
 Simplex 
 GEN1482R003 
 missense_variant 
 c.4984A>G 
 p.Met1662Val 
 De novo 
  
  
 GEN1482R004 
 synonymous_variant 
 c.3435A>T 
 p.Ser1145= 
 De novo 
  
  
 GEN1482R005 
 synonymous_variant 
 c.7518T>G 
 p.Leu2506= 
 De novo 
  
  
 GEN1482R006 
 missense_variant 
 c.5215T>A 
 p.Phe1739Ile 
 De novo 
  
  
 GEN1482R007 
 synonymous_variant 
 c.4614T>C 
 p.Leu1538= 
 De novo 
  
  
 GEN1482R008 
 missense_variant 
 c.5368A>C 
 p.Lys1790Gln 
 De novo 
  
  
 GEN1482R009 
 missense_variant 
 c.3245T>A 
 p.Val1082Glu 
 De novo 
  
  
 GEN1482R010 
 missense_variant 
 c.3155G>T 
 p.Ser1052Ile 
 De novo 
  
 Simplex 
 GEN1482R011 
 missense_variant 
 c.3289A>G 
 p.Ile1097Val 
 De novo 
  
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Deletion-Duplication
 15
 
1
Duplication
 1
 
1
Deletion
 1
 
1
Duplication
 1
 

No Animal Model Data Available

 

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