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Relevance to Autism

Two de novo variants in the UNC80 gene (one nonsense variant, one missense variant predicted to be damaging) were identified in ASD probands from the Simons Simplex Collection (Iossifov et al., 2014). An additional de novo loss-of-function (LoF) variant in the UNC80 gene was identified in a proband from the SAGE cohort in Stessman et al., 2017; while no phenotypic information was provided for the SAGE proband in this report, UNC80 was identified as one of eight genes showing a bias for autism versus intellectual disability (two one-tailed binomial tests, P<0.025 for either ASD or ID/DD cases).

Molecular Function

Component of the NALCN sodium channel complex, required for channel regulation. This complex is a cation channel activated by neuropeptides substance P, neurotensin, and extracellular calcium that regulates neuronal excitability by controlling the sizes of NALCN-dependent sodium-leak current. UNC80 is essential for NALCN sensitivity to extracellular calcium. Biallelic variants in UNC80 are responsible for infantile hypotonia with psychomotor retardation and characteristic facies-2 (IHPRF2; OMIM 616801).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
Using medical exome sequencing to identify the causes of neurodevelopmental disorders: experience of two clinical units and 216 patients.
ID
Hypotonia, dystonia
Support
Large-scale discovery of novel genetic causes of developmental disorders.
NDD
Support
Integrating de novo and inherited variants in 42
ASD
Support
2022
SCZ
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
Autism spectrum disorder and comorbid neurodevelopmental disorders (ASD-NDDs): Clinical and genetic profile of a pediatric cohort
ASD
Epilepsy/seizures
Support
Epilepsy/seizures
Recent Recommendation
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
DD
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN873R001 
 stop_gained 
 c.4069C>T 
 p.Arg1357Ter 
 De novo 
  
 Simplex 
 GEN873R002 
 missense_variant 
 c.7595A>C 
 p.Lys2532Thr 
 De novo 
  
 Simplex 
 GEN873R003 
 stop_gained 
 c.7810C>T 
 p.Arg2604Ter 
 De novo 
  
  
 GEN873R004 
 missense_variant 
 c.5378C>T 
 p.Pro1793Leu 
 De novo 
  
  
 GEN873R005a 
 frameshift_variant 
 c.2399del 
 p.Leu800TrpfsTer19 
 Familial 
 Paternal 
  
 GEN873R005b 
 stop_gained 
 c.4150G>T 
 p.Glu1384Ter 
 Familial 
 Maternal 
  
 GEN873R006 
 missense_variant 
 c.3001C>T 
 p.Arg1001Cys 
 Familial 
 Maternal 
 Simplex 
 GEN873R007 
 missense_variant 
 c.1441G>A 
 p.Asp481Asn 
 Familial 
 Maternal 
 Simplex 
 GEN873R008 
 missense_variant 
 c.637G>A 
 p.Val213Ile 
 Familial 
 Paternal 
 Simplex 
 GEN873R009 
 missense_variant 
 c.9295A>G 
 p.Lys3099Glu 
 Familial 
 Maternal 
 Simplex 
 GEN873R010 
 missense_variant 
 c.4289G>A 
 p.Ser1430Asn 
 Familial 
 Paternal 
 Simplex 
 GEN873R011 
 missense_variant 
 c.4949C>G 
 p.Thr1650Arg 
 Unknown 
  
 Simplex 
 GEN873R012 
 splice_site_variant 
 c.9510+1G>A 
  
 Unknown 
 Not maternal 
 Simplex 
 GEN873R013a 
 stop_gained 
 c.1567C>T 
 p.Arg523Ter 
 Familial 
 Paternal 
  
 GEN873R013b 
 splice_site_variant 
 c.9386G>C 
 p.Gly3129Ala 
 Familial 
 Maternal 
  
 GEN873R014 
 missense_variant 
 c.7122G>C 
 p.Glu2374Asp 
 Unknown 
  
  
 GEN873R015 
 missense_variant 
 c.9760C>A 
 p.Gln3254Lys 
 De novo 
  
  
 GEN873R016 
 stop_gained 
 c.2736C>A 
 p.Cys912Ter 
 De novo 
  
  
 GEN873R017 
 frameshift_variant 
 c.5151del 
 p.Trp1718GlyfsTer83 
 De novo 
  
  
 GEN873R018 
 missense_variant 
 c.7670G>T 
 p.Arg2557Ile 
 De novo 
  
 Simplex 
 GEN873R019a 
 splice_site_variant 
 c.3831+1G>A 
 p.? 
 Familial 
 Both parents 
 Multiplex 
 GEN873R020a 
 missense_variant 
 c.7699A>T 
 p.Thr2567Ser 
 Familial 
 Both parents 
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Deletion
 3
 
2
Deletion
 1
 
2
Deletion
 3
 
2
Deletion-Duplication
 25
 
2
Duplication
 3
 

No Animal Model Data Available

 

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