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Relevance to Autism

A homozygous mutation in the UBE3B gene was found to segregate perfectly with disease in a multiplex ASD family. No homozygotes for this mutation were observed in 1344 control chromosomes. An additional compound heterozygous mutation in the UBE3B gene was identified in one ASD case from the replication cohort that was not observed in 371 controls (Chahrour et al., 2012).

Molecular Function

The modification of proteins with ubiquitin is an important cellular mechanism for targeting abnormal or short-lived proteins for degradation. Ubiquitination involves at least three classes of enzymes: E1 ubiquitin-activating enzymes, E2 ubiquitin-conjugating enzymes, and E3 ubiquitin-protein ligases. This gene encodes a member of the E3 ubiquitin-conjugating enzyme family which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme and transfers the ubiquitin to the targeted substrates. A HECT (homology to E6-AP C-terminus) domain in the C-terminus of the longer isoform of this protein is the catalytic site of ubiquitin transfer and forms a complex with E2 conjugases.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Whole-exome sequencing and homozygosity analysis implicate depolarization-regulated neuronal genes in autism.
ASD
Support
Exome sequencing in multiplex autism families suggests a major role for heterozygous truncating mutations.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Blepharophimosis-ptosis-intellectual disability syndrome: A report of nine Egyptian patients with further expansion of phenotypic and mutational spectrum
Kaufman oculocerebrofacial syndrome
Autistic features
Support
Phenotype-to-genotype approach reveals head-circumference-associated genes in an autism spectrum disorder cohort.
ASD
Macrocephaly
Support
Gene expression profile associated with postnatal development of pyramidal neurons in the human prefrontal cortex implicates ubiquitin ligase E3 in...
SCZ
Support
Expanding the clinical and mutational spectrum of Kaufman oculocerebrofacial syndrome with biallelic UBE3B mutations.
Kaufman oculocerebrofacial syndrome
Support
ID
Recent Recommendation
Loss of function of the E3 ubiquitin-protein ligase UBE3B causes Kaufman oculocerebrofacial syndrome.
Kaufman oculocerebrofacial syndrome
DD, ID, Epilepsy/seizures
Recent Recommendation
Deficiency for the ubiquitin ligase UBE3B in a blepharophimosis-ptosis-intellectual-disability syndrome.
ID

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN351R001a 
 missense_variant 
 C>T 
 p.Arg40Cys 
 Familial 
 Both parents 
 Multiplex 
 GEN351R002a 
 missense_variant 
 c.838T>C 
 p.Ser280Pro 
 Familial 
  
  
 GEN351R002b 
 missense_variant 
 c.1825C>T 
 p.Arg609Cys 
 Familial 
  
  
 GEN351R003a 
 splice_site_variant 
 c.1741+2G>C 
  
 Familial 
 Both parents 
 Simplex 
 GEN351R004a 
 splice_site_variant 
 c.545-2A>G 
  
 Familial 
 Paternal 
 Multiplex 
 GEN351R004b 
 frameshift_variant 
 c.2223_2224del 
 p.Arg741SerfsTer3 
 Familial 
 Maternal 
 Multiplex 
 GEN351R005a 
 missense_variant 
 c.2180A>C 
 p.Gln727Pro 
 Familial 
 Both parents 
 Simplex 
 GEN351R006a 
 stop_gained 
 c.556C>T 
 p.Arg186Ter 
 Familial 
 Both parents 
 Simplex 
 GEN351R007a 
 stop_gained 
 c.1166G>A 
 p.Trp389Ter 
 Familial 
 Both parents 
 Simplex 
 GEN351R008 
 missense_variant 
 c.442C>T 
 p.Leu148Phe 
 Familial 
 Maternal 
 Multiplex 
 GEN351R009a 
 stop_gained 
 c.61G>T 
 p.Glu21Ter 
 Unknown 
  
 Simplex 
 GEN351R010a 
 missense_variant 
 c.1445T>A 
 p.Leu482His 
 Familial 
 Both parents 
 Simplex 
 GEN351R011a 
 missense_variant 
 c.1616T>C 
 p.Leu539Pro 
 Familial 
 Both parents 
 Simplex 
 GEN351R012a 
 missense_variant 
 c.2990G>C 
 p.Arg997Pro 
 Familial 
 Both parents 
 Simplex 
 GEN351R013a 
 missense_variant 
 c.2335G>A 
 p.Gly779Arg 
 Familial 
 Both parents 
 Multiplex 
 GEN351R014a 
 stop_gained 
 c.2098C>T 
 p.Gln700Ter 
 Familial 
 Maternal 
 Simplex 
 GEN351R014b 
 missense_variant 
 c.2990G>C 
 p.Arg997Pro 
 Unknown 
  
 Simplex 
 GEN351R015 
 frameshift_variant 
 c.615_616insACTC 
 p.Tyr206ThrfsTer9 
 Familial 
 Maternal 
 Simplex 
 GEN351R016a 
 stop_gained 
 c.1076G>A 
 p.Trp359Ter 
 Familial 
 Both parents 
 Multiplex 
 GEN351R017a 
 splice_site_variant 
 c.1282+1G>A 
  
 Familial 
 Both parents 
 Multiplex 
 GEN351R018a 
 missense_variant 
 c.2364G>C 
 p.Glu788Asp 
 Familial 
 Both parents 
 Multiplex 
 GEN351R019a 
 splice_site_variant 
 c.3015+1G>A 
  
 Familial 
 Both parents 
 Multiplex 
 GEN351R020a 
 frameshift_variant 
 c.1629dup 
 p.Asp544Ter 
 Familial 
 Both parents 
 Multiplex 
 GEN351R021a 
 stop_gained 
 c.1076G>A 
 p.Trp359Ter 
 Familial 
 Both parents 
 Simplex 
 GEN351R022 
 intron_variant 
 c.630+87G>A 
  
 De novo 
  
  
 GEN351R023 
 synonymous_variant 
 c.1818C>T 
 p.Cys606%3D 
 De novo 
  
  
 GEN351R024 
 missense_variant 
 c.2431G>A 
 p.Val811Ile 
 De novo 
  
  
 GEN351R025a 
 missense_variant 
 c.1445T>A 
 p.Leu482His 
 Familial 
  
 Simplex 
 GEN351R025b 
 missense_variant 
 c.1616T>C 
 p.Leu539Pro 
 Familial 
  
 Simplex 
 GEN351R026a 
 stop_gained 
 c.61G>T 
 p.Glu21Ter 
 Familial 
 Both parents 
 Multiplex 
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
12
Duplication
 1
 
12
Deletion
 1
 
12
Deletion
 1
 
12
Deletion-Duplication
 11
 

Model Summary

Pleiotropic effects of UBE3B deficiency and reinforce the physiological importance of ubiquitination in neuronal development and function in mammals.

References

Type
Title
Author, Year
Primary
Deficiency for the ubiquitin ligase UBE3B in a blepharophimosis-ptosis-intellectual-disability syndrome.

M_UBE3B_1_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Blastocyst injection of mutant embryonic stem cells obtained from BayGenomics gene trap ESC clone RRJ142.
Allele Type: Targeted (Knock Out)
Strain of Origin: Not specified
Genetic Background: 129P2/Ola x CBA/Ca
ES Cell Line: Not specified
Mutant ES Cell Line: Not Specified
Model Source: Not Specified

M_UBE3B_1_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Grip strength1
Decreased
Description: Decreased grip strength
Exp Paradigm: Bioseb grip strength meter
 Grip strength test
 9 weeks
Brain size1
Decreased
Description: Decreased brain size in hippocampus and dentate gyrus
Exp Paradigm: Histopathological examination
 Pathology
 14 weeks
Morphology of the retina1
Abnormal
Description: Abnormal eye morphology indicated by acute inflammation, calcification, and dilated lymphovascular channels of the cornea
Exp Paradigm: Histopathological examination
 Pathology
 Unreported
Hearing1
Decreased
Description: Decreased hearing indicated by mild hearing impairments
Exp Paradigm: Auditory brainstem response threshold
 Auditory brainstem response test
 Unreported
Serum lipid levels1
Decreased
Description: Decreased hdl, ldl, total cholesterol, and lathosterol levels
Exp Paradigm: Cholesterol measurement with mass spectrometry based analysis
 Measurement of blood lipids
 Unreported
Size/growth1
Decreased
Description: Decreased body weight and small body size
Exp Paradigm: General observations
 General observations
 Unreported
Mortality/lethality1
Increased
Description: Increased embryonic and/or perinatal lethality
Exp Paradigm: General observations
 General observations
 Unreported
Gene expression1
Decreased
Description: Decreased levels of ube3b mrna expression
Exp Paradigm: Ube3b mrna expression
 Quantitative pcr (qrt-pcr)
 Unreported
Brain morphology1
 No change
 Pathology
 14 weeks
Inner ear anatomy1
 No change
 Pathology
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Emotion, Immune response, Learning & memory, Maternal behavior, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Social behavior


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
DLK1 Protein delta homolog 1 8788 P80370 IP; LC-MS/MS
Huttlin EL , et al. 2015
IFI30 interferon, gamma-inducible protein 30 10437 P13284 IP; LC-MS/MS
Huttlin EL , et al. 2015
UBC ubiquitin C 7316 P63279 SILAC; MS
Meierhofer D , et al. 2008
FMR1 fragile X mental retardation 1 14265 P35922 HITS-CLIP
Darnell JC , et al. 2011

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