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Relevance to Autism

A hemizygous missense variant in the TSPYL2 gene was identified in two ASD-affected brothers from a Qatari ASD cohort (Al-Sarraj et al., 2024). De novo missense variants and a de novo in-frame deletion variant in this gene have previously been identified in male ASD probands from the SPARK cohort (Zhou et al., 2022). Tspyl2 loss-of-function mice have been shown to exhibit downregulation of N-methyl-D-aspartate receptor subunits 2A and 2B (GluN2A and GluN2B) in the hippocampus, impaired long-term potentiation at hippocampal Schaffer collateral-CA1 synapses, deficits in fear learning and memory, marginal increases in activity, significantly impaired prepulse inhibition, significantly increased sensitivity to the dopamine agonist amphetamine, and significantly smaller lateral ventricles (Tsang et al., 2014; Li et al., 2016). Tsang et al., 2014 also demonstrated by luciferase reporter assays and chromatin immunoprecipitation studies that TSPYL2 regulated the expression of Grin2a and Grin2b, the genes encoding GluN2A and GluN2B, and that TSPYL2 interacted with CREBBP, indicating that TSPYL2 may activate gene expression through this interaction. Moey et al., 2016 reported that Xp11.22 microduplications including IQSEC2, TSPYL2 and KDM5C were identified in four males presenting with intellectual disability, deficits in speech development, and behavior disturbances, including one individual with autism spectrum disorder; lymphoblastic cell lines from patients showed markedly elevated levels of TSPYL2 and KDM5C.

Molecular Function

This gene encodes a member of the testis-specific protein Y-encoded, TSPY-like/SET/nucleosome assembly protein-1 superfamily. The encoded protein is localized to the nucleolus where it functions in chromatin remodeling and as an inhibitor of cell-cycle progression. This protein is part of the CASK/TBR1/TSPYL2 transcriptional complex which modulates gene expression in response to neuronal synaptic activity, probably by facilitating nucleosome assembly (Wang et al., 2004).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The genetic landscape of autism spectrum disorder in the Middle Eastern population
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Tspyl2 Loss-of-Function Causes Neurodevelopmental Brain and Behavior Abnormalities in Mice
Support
Xp11.2 microduplications including IQSEC2, TSPYL2 and KDM5C genes in patients with neurodevelopmental disorders.
DD, ID
ASD, epilepsy/seizures
Support
The nucleosome assembly protein TSPYL2 regulates the expression of NMDA receptor subunits GluN2A and GluN2B
Support
Transcriptional modification by a CASK-interacting nucleosome assembly protein.
Support
The genetic landscape of autism spectrum disorder in an ancestrally diverse cohort
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1448R001 
 missense_variant 
 c.1668G>C 
 p.Gln556His 
 Familial 
 Maternal 
 Multiplex 
 GEN1448R002 
 missense_variant 
 c.1048C>T 
 p.Pro350Ser 
 De novo 
  
  
 GEN1448R003 
 inframe_deletion 
 c.1146_1148del 
 p.Ile383del 
 De novo 
  
  
 GEN1448R004 
 missense_variant 
 c.1493G>A 
 p.Ser498Asn 
 De novo 
  
  
 GEN1448R005 
 copy_number_gain 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN1448R006 
 copy_number_gain 
  
  
 Familial 
 Maternal 
 Extended multiplex 
 GEN1448R007 
 copy_number_gain 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN1448R008 
 copy_number_gain 
  
  
 De novo 
  
 Simplex 
 GEN1448R009 
 missense_variant 
 c.374G>T 
 p.Gly125Val 
 Familial 
 Maternal 
 Simplex 
 GEN1448R010 
 missense_variant 
 c.866G>A 
 p.Arg289His 
 Familial 
 Maternal 
 Simplex 
 GEN1448R011a 
 missense_variant 
 c.1277A>G 
 p.Asp426Gly 
 Familial 
 Maternal 
 Simplex 
 GEN1448R011b 
 missense_variant 
 c.1278C>A 
 p.Asp426Glu 
 Familial 
 Maternal 
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
X
Deletion-Duplication
 27
 
X
Duplication
 1
 
X
Duplication
 1
 
X
Duplication
 1
 
X
Deletion
 3
 
X
Deletion
 4
 
X
Deletion-Duplication
 1
 
X
Deletion
 1
 
X
Deletion-Duplication
 22
 

No Animal Model Data Available

 

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