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Relevance to Autism

Two de novo variants (one frameshift variant, one missense variant) were observed in the TSPAN4 gene in ASD probands from the Simons Simplex Collection in Iossifov et al., 2014, while a paternally-transmitted frameshift variant in this gene was observed in two of three affected siblings from a multiplex family from the iHART cohort in Ruzzo et al., 2019. Two separate studies used TADA analysis to identify TSPAN4 as an ASD candidate gene with a q-value < 0.1 (Du et al., 2019; Ruzzo et al., 2019).

Molecular Function

The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as the tetraspanin family. Most of these members are cell-surface proteins that are characterized by the presence of four hydrophobic domains. The proteins mediate signal transduction events that play a role in the regulation of cell development, activation, growth and motility. This encoded protein is a cell surface glycoprotein and is similar in sequence to its family member CD53 antigen. It is known to complex with integrins and other transmembrane 4 superfamily proteins.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
ASD
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Recent Recommendation
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Recent Recommendation
Nonrandom occurrence of multiple de novo coding variants in a proband indicates the existence of an oligogenic model in autism.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1105R001 
 missense_variant 
 c.128C>T 
 p.Thr43Met 
 De novo 
  
 Simplex 
 GEN1105R002 
 frameshift_variant 
 c.702del 
 p.Asp234GlufsTer168 
 De novo 
  
 Simplex 
 GEN1105R003 
 frameshift_variant 
 c.429del 
 p.Asp144ThrfsTer51 
 Familial 
 Paternal 
 Multiplex 
 GEN1105R004 
 missense_variant 
 c.563C>T 
 p.Ala188Val 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
11
Deletion-Duplication
 23
 
11
Duplication
 1
 
11
Duplication
 1
 

No Animal Model Data Available

 

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