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Relevance to Autism

A de novo nonsense variant in the TSPAN17 gene was identified in an ASD proband from the Simons Simplex Collection in O'Roak et al., 2012. Rare inherited loss-of-function and damaging missense variants in this gene were observed in ASD probands from the Simons Simplex Collection (Krumm et al., 2015) and in a cohort of Chinese ASD probands (Guo et al., 2017). Transmission and De Novo Association (TADA) analysis of a combined cohort consisting of 536 Chinese ASD probands and 1457 Chinese controls, as well as ASD probands and controls from the Simons Simplex Collection and the Autism Sequencing Consortium, in Guo et al., 2017 identified TSPAN17 as an ASD candidate gene with a PTADA of 0.001596.

Molecular Function

This gene encodes a member of the transmembrane 4 superfamily. It is characterized by four tetraspanin transmembrane segments. The function of this gene has not yet been determined. Regulates ADAM10 maturation.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Excess of rare, inherited truncating mutations in autism.
ASD
Recent Recommendation
Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN950R001 
 stop_gained 
 c.224C>A 
 p.Ser75Ter 
 De novo 
  
 Simplex 
 GEN950R002 
 stop_gained 
 c.28G>T 
 p.Glu10Ter 
 Familial 
 Maternal 
 Simplex 
 GEN950R003 
 missense_variant 
 c.670G>A 
 p.Val224Met 
 Familial 
 Maternal 
 Simplex 
 GEN950R004 
 missense_variant 
 c.670G>A 
 p.Val224Met 
 Familial 
 Maternal 
 Simplex 
 GEN950R005 
 missense_variant 
 c.730G>T 
 p.Gly244Cys 
 Familial 
 Maternal 
 Simplex 
 GEN950R006 
 splice_site_variant 
 c.777+1G>A 
  
 Familial 
  
  
 GEN950R007 
 synonymous_variant 
 c.546C>T 
 p.Cys182%3D 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
5
Duplication
 1
 
5
Duplication
 1
 
5
Duplication
 1
 
5
Duplication
 1
 
5
Deletion-Duplication
 15
 
5
Duplication
 13
 

No Animal Model Data Available

 

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