Summary Statistics:
ASD Reports: 14
Recent Reports: 3
Annotated variants: 61
Associated CNVs: 3
Evidence score: 4
Gene Score: 4S
Relevance to Autism
A de novo loss-of-function variant and multiple de novo missense variants in the TRRAP gene have been observed in ASD probands (Iossifov et al., 2014; Yuen et al., 2017), while multiple de novo missense variants in this gene have also been identified in probands with unspecified developmental disorders (Deciphering Developmental Disorders Study 2017) or epilepsy (Epi4K Consortium 2013). An integrated meta-analysis of de novo mutation data from a combined dataset of 10,927 individuals with neurodevelopmental disorders identified TRRAP as a gene with an excess of missense variants (false discovery rata < 5%, count >1) (Coe et al., 2018). Cogne et al., 2019 reported 24 individuals with 17 distinct de novo or apparently de novo missense variants that presented with two distinct clinical spectra: the first was a complex multi-systemic syndrome associated with various malformations of the brain, heart, kidneys and genitourinary system and a wide range of intellectual functioning in individuals with variants clustered between animo acids 1031 and 1159; the second spectrum manifested with autism spectrum disorder and/or intellectual disability and epilepsy in individuals with variants outside of this region.
Molecular Function
This gene encodes a large multidomain protein of the phosphoinositide 3-kinase-related kinases (PIKK) family. The encoded protein is a common component of many histone acetyltransferase (HAT) complexes and plays a role in transcription and DNA repair by recruiting HAT complexes to chromatin.
References
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
De novo variant of TRRAP in a patient with very early onset psychosis in the context of non-verbal learning disability and obsessive-compulsive dis...
Depression, psychosis
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Prevalence and architecture of de novo mutations in developmental disorders
DD
Support
Integrating de novo and inherited variants in 42
ASD
Support
De novo mutations in epileptic encephalopathies.
Epilepsy/seizures
Support
Rare variants in the outcome of social skills group training for autism
ASD
Support
De Novo Damaging DNA Coding Mutations Are Associated With Obsessive-Compulsive Disorder and Overlap With Tourette's Disorder and Autism.
OCD
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Recent Recommendation
Missense Variants in the Histone Acetyltransferase Complex Component Gene TRRAP Cause Autism and Syndromic Intellectual Disability.
DD, ID
ASD
Recent Recommendation
Neurodevelopmental disease genes implicated by de novo mutation and copy number variation morbidity.
GEN1069R001
missense_variant
c.1195G>A
p.Val399Ile
De novo
Simplex
GEN1069R002
missense_variant
c.5575C>T
p.Arg1859Cys
De novo
Simplex
GEN1069R003
missense_variant
c.11461C>T
p.Arg3821Cys
De novo
Simplex
GEN1069R004
frameshift_variant
c.7950_7951insAGATAAG
p.Glu2651ArgfsTer2
De novo
Simplex
GEN1069R005
missense_variant
c.310G>A
p.Glu104Lys
De novo
Simplex
GEN1069R006
missense_variant
c.3652G>A
p.Ala1218Thr
De novo
Simplex
GEN1069R007
missense_variant
c.5596T>A
p.Trp1866Arg
De novo
GEN1069R008
missense_variant
c.5598G>T
p.Trp1866Cys
De novo
GEN1069R009
missense_variant
c.4634C>T
p.Ala1545Val
De novo
GEN1069R010
missense_variant
c.10096C>G
p.His3366Asp
De novo
GEN1069R011
missense_variant
c.3337G>A
p.Val1113Met
De novo
GEN1069R012
missense_variant
c.7697C>G
p.Ala2566Gly
De novo
GEN1069R013
missense_variant
c.3311A>G
p.Glu1104Gly
De novo
GEN1069R014
missense_variant
c.11270G>A
p.Arg3757Gln
De novo
Simplex
GEN1069R015
missense_variant
c.10775C>G
p.Ser3592Cys
Familial
Maternal
Simplex
GEN1069R016
missense_variant
c.7090C>T
p.Leu2364Phe
Familial
Paternal
Simplex
GEN1069R017
missense_variant
c.3761C>A
p.Ser1254Tyr
Familial
Paternal
Simplex
GEN1069R018
missense_variant
c.2087G>A
p.Arg696His
Unknown
Simplex
GEN1069R019
missense_variant
c.2413C>T
p.Leu805Phe
De novo
Simplex
GEN1069R020
missense_variant
c.2580C>G
p.Phe860Leu
De novo
Simplex
GEN1069R021
missense_variant
c.2678G>T
p.Arg893Leu
De novo
Simplex
GEN1069R022
missense_variant
c.3093T>G
p.Ile1031Met
De novo
Simplex
GEN1069R023
missense_variant
c.3104G>A
p.Arg1035Gln
De novo
Simplex
GEN1069R024
missense_variant
c.3111C>A
p.Ser1037Arg
De novo
Multi-generational
GEN1069R025
missense_variant
c.3127G>A
p.Ala1043Thr
De novo
Simplex
GEN1069R026
missense_variant
c.3127G>A
p.Ala1043Thr
De novo
Simplex
GEN1069R027
missense_variant
c.3127G>A
p.Ala1043Thr
De novo
Simplex
GEN1069R028
missense_variant
c.3127G>A
p.Ala1043Thr
De novo
Simplex
GEN1069R029
missense_variant
c.3127G>A
p.Ala1043Thr
De novo
GEN1069R030
missense_variant
c.3311A>G
p.Glu1104Gly
De novo
Simplex
GEN1069R031
missense_variant
c.3316G>A
p.Glu1106Lys
De novo
Multiplex
GEN1069R032
missense_variant
c.3316G>A
p.Glu1106Lys
Unknown
Not maternal
Simplex
GEN1069R033
missense_variant
c.3331G>T
p.Gly1111Trp
De novo
Simplex
GEN1069R034
missense_variant
c.3475G>A
p.Gly1159Arg
De novo
Simplex
GEN1069R035
missense_variant
c.5596T>A
p.Trp1866Arg
De novo
Simplex
GEN1069R036
missense_variant
c.5598G>T
p.Trp1866Cys
De novo
Simplex
GEN1069R037
missense_variant
c.5647G>A
p.Gly1883Arg
De novo
Simplex
GEN1069R038
missense_variant
c.5647G>A
p.Gly1883Arg
De novo
Multi-generational
GEN1069R039
missense_variant
c.5795C>T
p.Pro1932Leu
Familial
Maternal
Multiplex
GEN1069R040
missense_variant
c.11270G>A
p.Arg3757Gln
De novo
Extended multiplex
GEN1069R041
missense_variant
c.2575G>A
p.Asp859Asn
Unknown
Multi-generational
GEN1069R042
missense_variant
c.4465G>A
p.Asp1489Asn
De novo
Simplex
GEN1069R043
missense_variant
c.6415T>C
p.Trp2139Arg
De novo
GEN1069R044
missense_variant
c.6011G>A
p.Arg2004Gln
De novo
GEN1069R045
missense_variant
c.5576G>A
p.Arg1859His
De novo
Simplex
GEN1069R046
missense_variant
c.2386G>C
p.Gly796Arg
Unknown
GEN1069R047
synonymous_variant
c.6G>A
p.Ala2%3D
De novo
GEN1069R048
missense_variant
c.52A>T
p.Met18Leu
De novo
GEN1069R049
missense_variant
c.68A>G
p.Gln23Arg
De novo
GEN1069R050
inframe_deletion
c.6110_6112del
p.Met2037_Asp2038delinsAsn
De novo
Simplex
GEN1069R051
missense_variant
c.1116G>T
p.Arg372Ser
De novo
GEN1069R052
missense_variant
c.2320C>A
p.Leu774Ile
De novo
GEN1069R053
missense_variant
c.2769C>G
p.Ser923Arg
De novo
GEN1069R054
synonymous_variant
c.5280C>T
p.Phe1760%3D
De novo
GEN1069R055
missense_variant
c.5786C>T
p.Pro1929Leu
De novo
GEN1069R056
synonymous_variant
c.6904C>A
p.Arg2302Ser
De novo
GEN1069R057
splice_region_variant
c.9300+4C>T
De novo
GEN1069R058
missense_variant
c.11261C>T
p.Thr3754Ile
De novo
GEN1069R059
frameshift_variant
c.4250_4254del
p.Thr1417ArgfsTer43
Familial
Maternal
Multiplex
GEN1069R060
missense_variant
c.5592C>G
p.Phe1864Leu
De novo
Multiplex
GEN1069R061
missense_variant
c.9529G>A
p.Val3177Met
Unknown
Simplex
No Common Variants Available
7
Deletion-Duplication
28
No Animal Model Data Available
No Interactions Available