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Relevance to Autism

A number of de novo variants in the TRPM3 gene, including a frameshift variant and a potentially damaging missense variant, have been observed in ASD probands (Iossifov et al., 2014; Satterstrom et al., 2020; Zhou et al., 2022). De novo gain-of-function variants in TRPM3 have been shown to cause a form of developmental and epileptic encephalopathy characterized by global developmental delay and intellectual disability, epilepsy, hypotonia, altered heat and/or pain sensitivity, and variable facial dysmorphism; a subset of affected individuals have been reported to also present with autism spectrum disorder, autistic features, and/or stereotypy (Dyment et al., 2019; de Sainte Agathe et al., 2020; Kang et al., 2021; Gauthier et al., 2021; Lines et al., 2022; Burglen et al., 2023).

Molecular Function

The product of this gene belongs to the family of transient receptor potential (TRP) channels. TRP channels are cation-selective channels important for cellular calcium signaling and homeostasis. The protein encoded by this gene mediates calcium entry, and this entry is potentiated by calcium store depletion.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
DD, ID, epilepsy/seizures
Autistic features
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
DD, ID, epilepsy/seizures
Support
DD, ID
Stereotypy
Support
DD, ID, epilepsy/seizures
Support
DD, ID, epilepsy/seizures
Support
DD, ID, epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
DD
ID, epilepsy/seizures, autistic features, stereoty
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
DD, epilepsy/seizures
Autistic features, stereotypy
Recent Recommendation
DD, ID, epilepsy/seizures
ASD or autistic features, stereotypy

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1385R001 
 missense_variant 
 c.2968G>A 
 p.Val990Met 
 De novo 
  
 Simplex 
 GEN1385R002 
 missense_variant 
 c.2968G>A 
 p.Val990Met 
 De novo 
  
 Simplex 
 GEN1385R003 
 missense_variant 
 c.2968G>A 
 p.Val990Met 
 De novo 
  
 Simplex 
 GEN1385R004 
 missense_variant 
 c.2968G>A 
 p.Val990Met 
 De novo 
  
 Simplex 
 GEN1385R005 
 missense_variant 
 c.2968G>A 
 p.Val990Met 
 De novo 
  
 Simplex 
 GEN1385R006 
 missense_variant 
 c.2968G>A 
 p.Val990Met 
 De novo 
  
 Simplex 
 GEN1385R007 
 missense_variant 
 c.2968G>A 
 p.Val990Met 
 De novo 
  
 Simplex 
 GEN1385R008 
 missense_variant 
 c.2810C>A 
 p.Ser937Tyr 
 De novo 
  
 Simplex 
 GEN1385R009 
 missense_variant 
 c.2968G>A 
 p.Val990Met 
 De novo 
  
  
 GEN1385R010 
 missense_variant 
 c.3605G>C 
 p.Trp1202Ser 
 De novo 
  
 Simplex 
 GEN1385R011 
 missense_variant 
 c.2968G>A 
 p.Val990Met 
 De novo 
  
 Simplex 
 GEN1385R012 
 missense_variant 
 c.2968G>A 
 p.Val990Met 
 De novo 
  
  
 GEN1385R013 
 missense_variant 
 c.2968G>A 
 p.Val990Met 
 De novo 
  
  
 GEN1385R014 
 missense_variant 
 c.2968G>A 
 p.Val990Met 
 De novo 
  
  
 GEN1385R015 
 missense_variant 
 c.2968G>A 
 p.Val990Met 
 De novo 
  
  
 GEN1385R016 
 missense_variant 
 c.2968G>A 
 p.Val990Met 
 De novo 
  
  
 GEN1385R017 
 missense_variant 
 c.2968G>A 
 p.Val990Met 
 De novo 
  
  
 GEN1385R018 
 missense_variant 
 c.2968G>A 
 p.Val990Met 
 De novo 
  
  
 GEN1385R019 
 missense_variant 
 c.1841A>T 
 p.Asp614Val 
 De novo 
  
 Simplex 
 GEN1385R020 
 missense_variant 
 c.2305C>G 
 p.Leu769Val 
 De novo 
  
  
 GEN1385R021 
 missense_variant 
 c.3004G>T 
 p.Val1002Leu 
 De novo 
  
 Simplex 
 GEN1385R022 
 missense_variant 
 c.3005T>G 
 p.Val1002Gly 
 De novo 
  
 Simplex 
 GEN1385R023 
 missense_variant 
 c.3019G>A 
 p.Gly1007Ser 
 Familial 
 Paternal 
 Simplex 
 GEN1385R024 
 missense_variant 
 c.3019G>A 
 p.Gly1007Ser 
 De novo 
  
  
 GEN1385R025 
 missense_variant 
 c.3376A>G 
 p.Asn1126Asp 
 De novo 
  
  
 GEN1385R026 
 missense_variant 
 c.3376A>G 
 p.Asn1126Asp 
 De novo 
  
  
 GEN1385R027 
 missense_variant 
 c.3397T>C 
 p.Ser1133Pro 
 De novo 
  
 Simplex 
 GEN1385R028 
 frameshift_variant 
 c.4341_4342del 
 p.Pro1448PhefsTer7 
 De novo 
  
 Simplex 
 GEN1385R029 
 frameshift_variant 
 c.5075_5084del 
 p.Lys1692ThrfsTer8 
 Familial 
 Maternal 
 Multiplex 
 GEN1385R030 
 5_prime_UTR_variant 
 c.-24T>G 
  
 De novo 
  
  
 GEN1385R031 
 intron_variant 
 c.3187+20T>C 
  
 De novo 
  
 Simplex 
 GEN1385R032 
 intron_variant 
 c.1272+121C>G 
  
 De novo 
  
  
 GEN1385R033 
 intron_variant 
 c.1272+129A>G 
  
 De novo 
  
  
 GEN1385R034 
 missense_variant 
 c.839G>A 
 p.Ser280Asn 
 De novo 
  
  
 GEN1385R035 
 missense_variant 
 c.2968G>A 
 p.Val990Met 
 De novo 
  
  
 GEN1385R036 
 frameshift_variant 
 c.2002del 
 p.His668ThrfsTer16 
 Familial 
 Paternal 
 Multiplex 
 GEN1385R037 
 stop_gained 
 c.71G>A 
 p.Trp24Ter 
 Familial 
 Paternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
9
Duplication
 1
 
9
Duplication
 1
 
9
Deletion
 2
 
9
Deletion-Duplication
 7
 
9
Deletion
 4
 
9
Deletion
 2
 
9
Deletion
 4
 
9
Deletion
 1
 
9
Deletion-Duplication
 3
 
9
Deletion
 1
 
9
Deletion
 1
 
9
Deletion-Duplication
 15
 

No Animal Model Data Available

No PIN Data Available
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