HELP     Sign In
Search

Relevance to Autism

Integration of familial whole-exome datasets of 3,531 individuals from 1,704 simplex ASD families and 50 multiplex ASD families and expression data from the BrainSpan Atlas of the Developmental Human Brain in Luo et al., 2020 identified a neurodevelopmentally co-regulated, sex-differentially expressed cluster of exons enriched with ASD-segregating deleterious variants in the TRAPPC2L gene (Bonferroni-corrected cluster P-value of 2.09E-02).

Molecular Function

This gene encodes a protein that interacts with the tethering factor trafficking protein particle (TRAPP complex). TRAPP complexes mediate the contact between vescicles and target membranes, and thus, are involved in vescicle-mediated transport of proteins and lipids. The encoded protein is related to the X-linked trafficking protein particle complex 2. Biallelic variants in this gene are responsible for early-onset progressive encephalopathy with episodic rhabdomyolysis (PEERB; OMIM 618331) (Milev et al., 2018; Al-Deri et al., 2020).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
A multidimensional precision medicine approach identifies an autism subtype characterized by dyslipidemia
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
A novel homozygous variant in TRAPPC2L results in a neurodevelopmental disorder and disrupts TRAPP complex function
Early-onset progressive encephalopathy with episod
Support
Bi-allelic mutations in TRAPPC2L result in a neurodevelopmental disorder and have an impact on RAB11 in fibroblasts
Early-onset progressive encephalopathy with episod

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1218R001 
 stop_gained 
 c.209dup 
 p.Tyr70Ter 
 Familial 
  
  
 GEN1218R002 
 stop_gained 
 c.216C>A 
 p.Tyr72Ter 
 Familial 
  
  
 GEN1218R003 
 splice_site_variant 
 c.295-2A>C 
  
 Familial 
  
  
 GEN1218R004 
 frameshift_variant 
 c.362_374+22dup 
  
 Familial 
  
  
 GEN1218R005 
 intron_variant 
 c.374+22_374+23insGCATCCAGTCCAGGTGGGCCCTACTTTCTGTGTCTGCATCCAGTCCAGGTGGGCCTTACTTTCTGTGTCT 
  
 Familial 
  
  
 GEN1218R006 
 intron_variant 
 c.374+22_374+23insGCATCCAGTCCAGGTGGGCCTTACTTTCTGTGTCT 
  
 Familial 
  
  
 GEN1218R007 
 intron_variant 
 c.374+22_374+23insGCATCCAGTCCAGGTGGGCCCTACTTTCTGTGTCTGCATCCAG 
  
 Familial 
  
  
 GEN1218R008 
 synonymous_variant 
 c.162G>A 
 p.Arg54%3D 
 De novo 
  
  
 GEN1218R009 
 synonymous_variant 
 c.210C>T 
 p.Tyr70%3D 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
16
Duplication
 1
 
16
Duplication
 2
 
16
Duplication
 6
 
16
Duplication
 1
 
16
Duplication
 1
 
16
Deletion-Duplication
 3
 
16
Deletion
 12
 
16
Deletion-Duplication
 34
 

No Animal Model Data Available

 

No Interactions Available
HELP
Copyright © 2017 MindSpec, Inc.