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Relevance to Autism

Rydzanicz et al., 2024 reported a postzygotic mosaic nonsense variant in the TRAP1 gene (p.Gln639Ter) in an ASD proband from an ASD-discordant monozygotic twin pair; additional screening of 176 unrelated Polish ASD probands identified the same TRAP1 variant in a male patient who had inherited it from a healthy mother. Knock-in mice with the equivalent p.Gln641Ter mutation displayed ASD-related behavioral abnormalities that were more pronounced in males than in females, and this mutation also resulted in sex-specific changes in synaptic plasticity, the number of presynaptic mitochondria, and mitochondrial respiration. Inherited loss-of-function variants in the TRAP1 gene have previously been observed in individuals with ASD from four multiplex families from the AGRE cohort (Cirnigliaro et al., 2023).

Molecular Function

This gene encodes a mitochondrial chaperone protein that is member of the heat shock protein 90 (HSP90) family. The encoded protein has ATPase activity and interacts with tumor necrosis factor type I. This protein may function in regulating cellular stress responses.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Mutation in the mitochondrial chaperone TRAP1 leads to autism with more severe symptoms in males
ASD
Support
Resolving complex duplication variants in autism spectrum disorder using long-read genome sequencing
ASD
Support
Reanalysis of Trio Whole-Genome Sequencing Data Doubles the Yield in Autism Spectrum Disorder: De Novo Variants Present in Half
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1469R001 
 stop_gained 
 c.1915C>T 
 p.Gln639Ter 
 De novo 
  
 Simplex 
 GEN1469R002 
 stop_gained 
 c.1915C>T 
 p.Gln639Ter 
 Familial 
 Maternal 
 Simplex 
 GEN1469R003 
 missense_variant 
 c.1753T>C 
 p.Trp585Arg 
 Unknown 
 Not maternal 
 Unknown 
 GEN1469R004 
 missense_variant 
 c.1418C>T 
 p.Ser473Leu 
 Familial 
 Maternal 
 Unknown 
 GEN1469R005 
 missense_variant 
 c.1390A>G 
 p.Ile464Val 
 Familial 
 Paternal 
 Unknown 
 GEN1469R006 
 stop_gained 
 c.2107C>T 
 p.Arg703Ter 
 Familial 
 Maternal 
 Multiplex 
 GEN1469R007 
 frameshift_variant 
 c.1990_1994del 
 p.Leu664SerfsTer19 
 Familial 
 Maternal 
 Multiplex 
 GEN1469R008 
 stop_gained 
 c.1804C>T 
 p.Arg602Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN1469R009 
 splice_site_variant 
 c.248-2A>G 
 p.? 
 Familial 
 Paternal 
 Multiplex 
 GEN1469R010 
 missense_variant 
 c.757A>G 
 p.Ile253Val 
 Familial 
 Paternal 
 Simplex 
 GEN1469R011 
 missense_variant 
 c.383G>A 
 p.Arg128His 
 Familial 
 Unknown 
 Simplex 
 GEN1469R012a 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Simplex 
 GEN1469R012b 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
16
Deletion-Duplication
 73
 
16
Duplication
 2
 
16
Duplication
 3
 
16
Deletion-Duplication
 3
 
16
Deletion
 5
 

Model Summary

The homozygous and heterozygous mutant Trap1 mouse models with a nonsense mutation found in humans (Q639X) are viable and fertile. Male but not female mutants show in-cohort sociability deficits, and all mutants show deficits in social approach with a novel stimulus mouse.

References

Type
Title
Author, Year
Primary
Mutation in the mitochondrial chaperone TRAP1 leads to autism with more severe symptoms in males

M_TRAP1_1_KI_HM_Q639X

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Homozygous knockin mice carry two alleles with a Q641X nonsense mutation in the Trap1 gene.
Allele Type: ASD mutation
Strain of Origin: CBA
Genetic Background: C57BL/6
ES Cell Line: Not applicable
Mutant ES Cell Line:
Model Source: Mouse Genome Engineering Facility (www.crisprmice.eu)

M_TRAP1_2_KI_HT_Q639X

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Heterozygous knockin mice carry one allele with a Q641X nonsense mutation in the Trap1 gene.
Allele Type: ASD mutation
Strain of Origin: CBA
Genetic Background: C57BL/6
ES Cell Line: Not applicable
Mutant ES Cell Line:
Model Source: Mouse Genome Engineering Facility (www.crisprmice.eu)

M_TRAP1_1_KI_HM_Q639X

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Dendritic architecture: spine density1
Abnormal
Description: Male homozygous mice displayed increased spine density in hippocampus, slightly decreased in the amygdala and no change in the medial prefrontal cortex. Female homozygous mutants show slightly reduced spine density in hippocampus, increased in medial prefrontal cortex, no change in amygdala.
Exp Paradigm: DiI staining
 Fluorescence microscopy
 
Mitochondrial number1
Decreased
Description: The density of presynaptic mitochondria is significantly lower in the CA1 hippocampus of male homozygous mice.
 Electron microscopy
 
Dendritic architecture: spine morphology1
Decreased
Description: Male homozygous mutants have spines that are shorter and had decreased area, in the hippocampus, but no change in medial prefrontal cortex or amygdala.
Exp Paradigm: DiI staining
 Fluorescence microscopy
 
Dendritic architecture: spine morphology1
Increased
Description: Female homozygous mutants have larger individual spines in the hippocampus and medial prefrontal cortex but no change in the amygdala.
Exp Paradigm: DiI staining
 Fluorescence microscopy
 
Presynaptic function: paired-pulse facilitation1
Decreased
Description: Male homozygous mice show a decrease in paired-pulse facilitation.
 Field potential recordings
 
Local field potential1
Decreased
Description: Female homozygous mice exhibited reduced AMPAR- and NMDAR-mediated synaptic transmission.
 Field potential recordings
 
Local field potential1
Increased
Description: AMPAR-mediated synaptic signals were significantly more pronounced in the hippocampus of male homozygous mice. Male homozygous mice exhibited significantly larger NMDARs-mediated synaptic responses compared to wildtype littermates.
 Field potential recordings
 
Social approach1
Decreased
Description: Homozygous mice explored the non-social object and the new mouse equally.
 Three-chamber social approach test
 
Social interaction1
Decreased
Description: Deficits in social interaction in male homozygous mutant mice compared with wildtype in cohort sociability.
 Eco-HAB system
 
Targeted expression1
Decreased
Description: Protein levels of Trap1 were completely ablated in homozygous mutant mice.
 Quantitative PCR (qRT-PCR)
 
Targeted expression1
Decreased
Description: mRNA levels of Trap1 were completely ablated in homozygous mutant mice.
 Quantitative PCR (qRT-PCR)
 
Mitochondrial function1
Increased
Description: The mitochondria from homozygous mice respired at a significantly higher rate than the wildtype.
 Mitochondrial respiratory chain enzyme analysis
 
Mortality/lethality1
 No change
 General observations
 
Differential gene expression1
 No change
 RNA sequencing
 
General locomotor activity1
 No change
 Eco-HAB system
 
Brain morphology1
 No change
 Histology
 
Mitochondrial number1
 No change
 Electron microscopy
 
Presynaptic function: paired-pulse facilitation1
 No change
 Field potential recordings
 
Social interaction1
 No change
 Eco-HAB system
 
 Not Reported:

M_TRAP1_2_KI_HT_Q639X

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Dendritic architecture: spine morphology1
Increased
Description: Female heterozygous mutants have larger spine size in the medial prefrontal cortex but show no change in the hippocampus or amygdala.
Exp Paradigm: DiI staining
 Fluorescence microscopy
 
Dendritic architecture: spine density1
Increased
Description: Male and female homozygous mutants show increased spine density in the medial prefrontal cortex but no change in hippocampus or amygdala.
Exp Paradigm: DiI staining
 Fluorescence microscopy
 
Mitochondrial number1
Decreased
Description: The density of presynaptic mitochondria is significantly lower in the CA1 hippocampus of male heterozygous mice.
 Electron microscopy
 
Local field potential1
Decreased
Description: Heterozygous female mice exhibit reduced AMPAR- and NMDAR-mediated synaptic transmission.
 Field potential recordings
 
Social approach1
Decreased
Description: Heterozygous mice explored the non-social object and the new mouse equally.
 Three-chamber social approach test
 
Social interaction1
Decreased
Description: Deficits in social interaction in male heterozygous mutant mice compared with wildtype in cohort sociability.
 Eco-HAB system
 
Targeted expression1
Decreased
Description: Protein levels of Trap1 were significantly reduced in heterozygotes.
 Western blot
 
Targeted expression1
Decreased
Description: mRNA levels of Trap1 were significantly reduced in heterozygotes.
 Western blot
 
Mortality/lethality1
 No change
 General observations
 
Differential gene expression1
 No change
 RNA sequencing
 
General locomotor activity1
 No change
 Eco-HAB system
 
Brain morphology1
 No change
 Histology
 
Dendritic architecture: spine morphology1
 No change
 Fluorescence microscopy
 
Mitochondrial number1
 No change
 Electron microscopy
 
Local field potential1
 No change
 Field potential recordings
 
Presynaptic function: paired-pulse facilitation1
 No change
 Field potential recordings
 
Social interaction1
 No change
 Eco-HAB system
 
 Not Reported:

 

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