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Relevance to Autism

Genetic association has been found between the TPH2 gene and autism in a Caucasian (from US and Italy) population cohort (Coon et al., 2005). However, other studies have found no genetic association between the TPH2 gene and autism in Italian, Caucasian-American and other population cohorts. Separately, genetic association has been found between the TPH2 gene and unipolar major depression in a US population cohort.

Molecular Function

The encoded protein has tryptophan 5-monooxygenase activity.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Possible association between autism and variants in the brain-expressed tryptophan hydroxylase gene (TPH2).
ASD
Positive Association
Genetic association and gene-gene interaction analyses suggest likely involvement of ITGB3 and TPH2 with autism spectrum disorder (ASD) in the Indi...
ASD
Positive Association
Association with tryptophan hydroxylase 2 gene polymorphisms and autism spectrum disorders in Korean families.
ASD
Negative Association
No human tryptophan hydroxylase-2 gene R441H mutation in a large cohort of psychiatric patients and control subjects.
ASD
OCD, Affective disorders
Negative Association
A detailed association analysis between the tryptophan hydroxylase 2 (TPH2) gene and autism spectrum disorders in a Japanese population.
ASD
Negative Association
Case-control and family-based association studies of candidate genes in autistic disorder and its endophenotypes: TPH2 and GLO1.
ASD
Support
High prevalence of multilocus pathogenic variation in neurodevelopmental disorders in the Turkish population
DD, ID
Support
Case Report: Whole Exome Sequencing Revealed Disease-Causing Variants in Two Genes in a Patient With Autism Spectrum Disorder, Intellectual Disability, Hyperactivity, Sleep and Gastrointestinal Distur
ASD
DD, ID
Support
Autism-associated missense genetic variants impact locomotion and neurodevelopment in Caenorhabditis elegans.
ASD
Support
Mutations in Human Accelerated Regions Disrupt Cognition and Social Behavior.
ASD
Highly Cited
Loss-of-function mutation in tryptophan hydroxylase-2 identified in unipolar major depression.
UP
Highly Cited
Tryptophan hydroxylase-2 controls brain serotonin synthesis.
Recent Recommendation
Functional domains of human tryptophan hydroxylase 2 (hTPH2).
Recent Recommendation
Tryptophan hydroxylase-2 gene polymorphisms in rhesus monkeys: association with hypothalamic-pituitary-adrenal axis function and in vitro gene expr...
Recent Recommendation
Additive effects of serotonin transporter and tryptophan hydroxylase-2 gene variation on emotional processing.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN254R001 
 missense_variant 
 c.674G>A 
 p.Arg225Gln 
 Familial 
 Paternal 
  
 GEN254R002 
 intergenic_variant 
 T>C 
  
  
  
 Unknown 
 GEN254R003 
 stop_gained 
 c.775C>T 
 p.Gln259Ter 
 De novo 
  
 Simplex 
 GEN254R004a 
 missense_variant 
 c.944A>G 
 p.Asp315Gly 
 Familial 
 Both parents 
 Multiplex 

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN254C001 
 intron_variant 
 rs4341581 
 c.106-291G>T;c.106-273G>T 
 T>G 
 Caucasian from US and Italy 
 Discovery 
 GEN254C002 
 intron_variant 
 rs11179000 
 c.540+162A>T;c.558+162A>T 
  
 Caucasian from US and Italy 
 Discovery 
 GEN254C003 
 missense_variant 
 rs120074175 
 c.1322G>A 
 p.Arg441His 
 US 
 Discovery 
 GEN254C004 
 intron_variant 
 rs2129575 
 c.540+1607G>T;c.558+1607G>T 
 T/G 
 Japanese 
 Discovery 
 GEN254C005 
 intron_variant 
 rs2129575 
 c.540+1607G>T;c.558+1607G>T 
 G/T 
 Korean 
 Replication 
 GEN254C006 
 2KB_upstream_variant 
 rs4570625 
 c.-844G>T 
 T/G 
 Korean 
 Discovery 
 GEN254C007 
 synonymous_variant 
 rs7305115 
 c.936A>G;c.954A>G 
 p.(=) 
 Korean 
 Discovery 
 GEN254C008 
 2KB_upstream_variant 
 rs4570625 
 c.-844G>T 
 G/T 
 India; 633 subjects including autistic families (140 trios, 23 duos & 2 singles) and healthy controls (n=165) 
 Replication 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
12
Duplication
 1
 
12
Deletion
 1
 
12
Duplication
 3
 
12
Deletion
 1
 
12
Deletion-Duplication
 11
 

Model Summary

Tph2 nul mice have no brain TPH2 protein, therefore lack brain serotonin. They exhibit deficiencies in social interaction and ultrasonic vocalization and increase in repetitive behavior.

References

Type
Title
Author, Year
Primary
Mice genetically depleted of brain serotonin display social impairments, communication deficits and repetitive behaviors: possible relevance to aut...
Additional
Reduced isolation-induced pup ultrasonic communication in mouse pups lacking brain serotonin.

M_TPH2_1_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: A neo cassete replaced 109 bp of exon 1 of the Tph2 gene, no brain Tph2 protein is detectable in the nullmice.
Allele Type: Targeted(knockout)
Strain of Origin:
Genetic Background: C57BL/6*Sv129
ES Cell Line:
Mutant ES Cell Line:
Model Source:

M_TPH2_2_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: A deletion of 5.2 kb region containing the coding region of exon 1 and 2 of the TPh2 gene, resulting in a complete disabling of transcription and translation of the Tph2 gene in homozygous mice.
Allele Type: Targeted(knockout/marker)
Strain of Origin:
Genetic Background: C57BL/6
ES Cell Line: E14tg2A
Mutant ES Cell Line:
Model Source:

M_TPH2_3_KO_HT

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: A deletion of 5.2 kb region containing the coding region of exon 1 and 2 of the Tph2 gene, resulting in a complete disabling of transcription and translation of Tph2 gene in targeted chromosome.
Allele Type: Targeted(knockout/marker)
Strain of Origin:
Genetic Background: C57BL/6
ES Cell Line:
Mutant ES Cell Line:
Model Source:

M_TPH2_1_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Righting response1
Decreased
Description: Tph2 null pups take longer to develop the righting reflex , monitored as a development milestone checked within the first two weeks of life, compared to wild type control pups
Exp Paradigm: NA
 NA
 P1:p13
Negative geotaxis1
Decreased
Description: Tph2 null pups take longer to correctly display negative geotaxis, monitored as a development milestone checked within the first two weeks of life, compared to wild type control pups
Exp Paradigm: NA
 NA
 P1:p21
Brain size1
Decreased
Description: Tph2 null pups have reduced brain weight compared to wild type controls
Exp Paradigm: NA
 NA
 3 weeks
Perseveration1
Increased
Description: Tph2 mice show increased repetitive behavior measured as the amount of shredding of nestlets (similar to nest-building)
Exp Paradigm: NA
 Nest building assay
 3 weeks
Social scent marking or recognition1
Decreased
Description: Tph2 null pups have reduced recognition of maternal scent compared to wild type pups, tested in an assay where the choice to sniff maternal scent (in litter) over stranger dam scent, distributed in separate locations in a polycarbonate cage, was measured in p14 pups.
Exp Paradigm: In a transparent polycarbonate cage litters from the mother, clean cage and stranger dams are placed in one corner, center and a third corner respectively. p14 pups were placed at the center, facing the two different scented litters, randomly, over three 1 min trials, with 10 s intervals and the time spent in each part of the cage was estimated
 Maternal scent recognition test
 P14
Social interaction1
Decreased
Description: Tph2 female (non aggressive subjects) show reduced reciprocal social interaction with age and sex matched stranger stimulus mice
Exp Paradigm: Females only
 Reciprocal social interaction test
 Adult
Social scent marking or recognition1
Decreased
Description: Tph2 null adult mice have statistically significant decrease in preference for stranger mouse scent compared to adult wild type controls. tph2 null adults spend less time sniffing objects permeated with stranger mouse litter scent
Exp Paradigm: NA
 Olfactory discrimination test
 Adult
Social dishabituation1
Decreased
Description: Tph2 null adults and weanling mice show reduced social dishabituation as they do not show increased interest towards a novel stimulus mouse in the dishabituation trial following the habituation trials, unlike wild type mice which show increased interest in a novel mouse
Exp Paradigm: Three trials of habituation with a familiar mouse, to check the amount of interaction with increasing habituation, followed by 1 trial for dishabituation with the introduciton of a novel stimulus mouse ( test and stimulus mice placed in adjacent cages)
 Habituation-dishabituation test
 3 weeks, adult
Social memory1
Decreased
Description: Tph2 null adult mice show reduced sociall memory as they fail to differentiate between a novel stimulus mouse compared to a familiar stimulus mouse, unlike wild type adult controls
Exp Paradigm: NA
 Three-chamber social approach test
 Adult
Social interaction: opposite sex1
Decreased
Description: Tph2 male adults display reduced urine marking (stimulation( in response to stimulus scent from female mice in estrous, compared to wild type male mice. this is considered to be analogous to reduced social interaction or response to opposite sex by the authors
Exp Paradigm: Males only
 Scent stimulus
 Adult
Size/growth1
Decreased
Description: Body weight of tph2 null mice is lower than controls till about three weeks (p21-23) of age
Exp Paradigm: NA
 Body weight measurement
 3 weeks
Developmental trajectory1
Decreased
Description: Overall, tph2 null mice have a delayed acquisition of several postnatal developlmental markers showing growth retardation, delayed acquisition of fur color and eye opening.
Exp Paradigm: NA
 General observations
 P1:p21
Exploratory activity1
Decreased
Description: Tph2 null mice have reduced interest:spend less time sniffing, in a novel object placed in an open field, compared to wild type controls, showing a reduction in exploratory activity
Exp Paradigm: NA
 Open field test
 Adult
Size/growth1
 No change
 Body weight measurement
 Adult
Anxiety1
 No change
 Light-dark exploration test
 3 weeks
Olfactory learning and memory1
 No change
 Olfactory habituation-dishabituation test
 Adult
General locomotor activity1
 No change
 Open field test
 Adult
Brain size1
 No change
 NA
 NA
Social approach1
 No change
 Three-chamber social approach test
 Adult
Social habituation1
 No change
 Habituation-dishabituation test
 3 weeks, adult
Social scent marking or recognition1
 No change
 Olfactory discrimination test
 3 weeks
 Not Reported: Circadian sleep/wake cycle, Communications, Immune response, Maternal behavior, Molecular profile, Neurophysiology, Physiological parameters, Seizure, Sensory

M_TPH2_2_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Core body temperature1
Decreased
Description: On p6 and p9 tph2 null pups have lower body temperature than het and wild type controls
Exp Paradigm: NA
 Body temperature measurement
 P6,p9
Ultrasonic vocalization: isolation induced1
Decreased
Description: Tph2 pups emit fewer isolation induced usvs compared to wild type controls at p6 ( this is the day wt pups emit the most usv calls). at this age they appear to emit similar usvs compared to heterozygous pups.
Exp Paradigm: NA
 Spectographic analysis of vocalization recordings
 P6
Ultrasonic vocalization: isolation induced1
Decreased
Description: Tph2 null pups emit fewer isolation induced usvs compared to heterozygous and wild type control pups at p3
Exp Paradigm: NA
 Spectographic analysis of vocalization recordings
 P3
Size/growth1
Decreased
Description: NA
Exp Paradigm: NA
 NA
 P3,p6,p9
Ultrasonic vocalization: isolation induced1
 No change
 Spectographic analysis of vocalization recordings
 P9
Righting response1
 No change
 Righting reflex test
 P3,p6,p9
Core body temperature1
 No change
 Body temperature measurement
 P3
 Not Reported: Circadian sleep/wake cycle, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

M_TPH2_3_KO_HT

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Ultrasonic vocalization: isolation induced1
 No change
 Spectographic analysis of vocalization recordings
 P3, p6, p9
Righting response1
 No change
 Righting reflex test
 P3,p6,p9
Core body temperature1
 No change
 Body temperature measurement
 P3,p6,p9
 Not Reported: Circadian sleep/wake cycle, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

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