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Relevance to Autism

A de novo missense variant in the TMEM39B gene was identified in an ASD proband from the Autism Sequencing Consortium in De Rubeis et al., 2014, a de novo frameshift variant in this gene was identified in an ASD proband from the Simons Simplex Collection in Iossifov et al., 2014., and a maternally-transmitted frameshift variant in this gene was identified in one of two affected siblings from a multiplex ASD family from the iHART cohort (Ruzzo et al., 2019). Two separate studies used TADA analysis to identify TMEM39B as an ASD candidate gene with a q-value < 0.1 (Du et al., 2019; Ruzzo et al., 2019).

Molecular Function

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Recent Recommendation
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Recent Recommendation
Nonrandom occurrence of multiple de novo coding variants in a proband indicates the existence of an oligogenic model in autism.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1104R001 
 missense_variant 
 c.835A>G 
 p.Lys279Glu 
 De novo 
  
  
 GEN1104R002 
 stop_gained 
 c.529C>T 
 p.Arg177Ter 
 De novo 
  
 Simplex 
 GEN1104R003 
 frameshift_variant 
 c.-26del 
  
 Familial 
 Maternal 
 Multiplex 
 GEN1104R004 
 missense_variant 
 c.353C>T 
 p.Thr118Met 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Duplication
 2
 
1
Deletion-Duplication
 1
 
1
Duplication
 1
 

No Animal Model Data Available

 

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