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Relevance to Autism

Hemizygous or heterozygous mutations in the TFE3 gene are responsible for X-linked syndromic intellectual developmental disorder with pigmentary mosaicism and coarse facies (MRXSPF; OMIM 301066), a disorder characterized by a phenotypic triad of severe developmental delay, coarse facial dysmorphisms, and Blaschkoid pigmentary mosaicism; autism spectrum disorder or autistic features (frequently in the form of stereotypic movements) have been observed in a subset of affected individuals (Villegas et al., 2019; Diaz et al., 2020; Lehalle et al., 2020). A rare potentially damaging de novo missense variant in this gene was observed in a male ASD proband from the Autism Sequencing Consortium (Satterstrom et al., 2020).

Molecular Function

This gene encodes a basic helix-loop-helix domain-containing transcription factor that binds MUE3-type E-box sequences in the promoter of genes. The encoded protein promotes the expression of genes downstream of transforming growth factor beta (TGF-beta) signaling.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Lysosomal Signaling Licenses Embryonic Stem Cell Differentiation via Inactivation of Tfe3
DD, ID, epilepsy/seizures
Stereotypy
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
TFE3-associated neurodevelopmental disorder: A distinct recognizable syndrome
ASD, DD, ID
Epilepsy/seizures
Recent Recommendation
De novo mutations in the X-linked TFE3 gene cause intellectual disability with pigmentary mosaicism and storage disorder-like features
DD, ID
ASD or autistic behavior, stereotypy, epilepsy/sei

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1291R001 
 missense_variant 
 c.356A>C 
 p.Gln119Pro 
 De novo 
  
  
 GEN1291R002 
 missense_variant 
 c.602A>C 
 p.Gln201Pro 
 De novo 
  
  
 GEN1291R003 
 missense_variant 
 c.245C>T 
 p.Thr82Met 
 De novo 
  
  
 GEN1291R004 
 missense_variant 
 c.560C>G 
 p.Thr187Arg 
 De novo 
  
  
 GEN1291R005 
 missense_variant 
 c.557C>T 
 p.Pro186Leu 
 De novo 
  
  
 GEN1291R006 
 missense_variant 
 c.35G>A 
 p.Arg12Gln 
 De novo 
  
 Simplex 
 GEN1291R007 
 splice_site_variant 
 c.465+1G>A 
  
 De novo 
  
 Simplex 
 GEN1291R008 
 missense_variant 
 c.559A>C 
 p.Thr187Pro 
 De novo 
  
  
 GEN1291R009 
 missense_variant 
 c.572T>C 
 p.Leu191Pro 
 De novo 
  
  
 GEN1291R010 
 missense_variant 
 c.572T>C 
 p.Leu191Pro 
 De novo 
  
  
 GEN1291R011 
 missense_variant 
 c.560C>A 
 p.Thr187Lys 
 De novo 
  
  
 GEN1291R012 
 splice_site_variant 
 c.465+1G>A 
  
 De novo 
  
  
 GEN1291R013 
 missense_variant 
 c.551A>G 
 p.Glu184Gly 
 De novo 
  
  
 GEN1291R014 
 missense_variant 
 c.560C>T 
 p.Thr187Met 
 De novo 
  
  
 GEN1291R015 
 missense_variant 
 c.570C>G 
 p.His190Gln 
 De novo 
  
  
 GEN1291R016 
 missense_variant 
 c.566A>G 
 p.Tyr189Cys 
 De novo 
  
  
 GEN1291R017 
 missense_variant 
 c.350G>A 
 p.Arg117Gln 
 De novo 
  
  
 GEN1291R018 
 missense_variant 
 c.350G>A 
 p.Arg117Gln 
 De novo 
  
  
 GEN1291R019 
 missense_variant 
 c.560C>T 
 p.Thr187Met 
 De novo 
  
  
 GEN1291R020 
 missense_variant 
 c.563G>A 
 p.Arg188His 
 De novo 
  
  
 GEN1291R021 
 missense_variant 
 c.350G>A 
 p.Arg117Gln 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
X
Deletion-Duplication
 13
 
X
Duplication
 1
 
X
Duplication
 7
 
X
Duplication
 1
 
X
Deletion
 2
 
X
Deletion
 4
 
X
Deletion-Duplication
 1
 
X
Deletion
 1
 
X
Deletion-Duplication
 21
 

No Animal Model Data Available

 

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