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Relevance to Autism

A de novo missense variant that was predicted to be possibly damaging (defined as 1 MPC < 2) was identified in the TEK gene in an ASD proband from the Autism Sequencing Consortium, while three protein-truncating variants in this gene were subsequently observed in case samples from the Danish iPSYCH study (Satterstrom et al., 2020). TADA analysis of de novo variants from the Simons Simplex Collection and the Autism Sequencing Consortium and protein-truncating variants from iPSYCH in Satterstrom et al., 2020 identified TEK as a candidate gene with a false discovery rate (FDR) between 0.05 and 0.1 (0.05 < FDR 0.1).

Molecular Function

This gene encodes a receptor that belongs to the protein tyrosine kinase Tie2 family. The encoded protein possesses a unique extracellular region that contains two immunoglobulin-like domains, three epidermal growth factor (EGF)-like domains and three fibronectin type III repeats. The ligand angiopoietin-1 binds to this receptor and mediates a signaling pathway that functions in embryonic vascular development. Mutations in this gene are associated with inherited venous malformations of the skin and mucous membranes.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Analysis of recent shared ancestry in a familial cohort identifies coding and noncoding autism spectrum disorder variants
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1168R001 
 missense_variant 
 c.2789A>G 
 p.Asn930Ser 
 De novo 
  
 Multiplex 
 GEN1168R002 
 stop_gained 
 c.817G>T 
 p.Gly273Ter 
 Unknown 
  
  
 GEN1168R003a 
 missense_variant 
 c.1313A>G 
 p.Asn438Ser 
 Familial 
 Paternal 
 Simplex 
 GEN1168R003b 
 missense_variant 
 c.1564C>T 
 p.Arg522Cys 
 Familial 
 Paternal 
 Simplex 
 GEN1168R003c 
 missense_variant 
 c.2833G>A 
 p.Ala945Thr 
 Familial 
 Maternal 
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
9
Deletion
 7
 
9
Deletion
 2
 
9
N/A
 1
 
9
Duplication
 1
 
9
Duplication
 1
 
9
Duplication
 7
 
9
Duplication
 3
 
9
Duplication
 3
 
9
Duplication
 1
 

No Animal Model Data Available

No PIN Data Available
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