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Relevance to Autism

A de novo in-frame deletion variant in the TAOK1 gene was identified in an ASD proband from the Autism Sequencing Consortium (De Rubeis et al., 2014). Dulovic-Mahlow et al., 2019 described eight individuals with de novo TAOK1 variants who presented with a neurodevelopmental disorder characterized by developmental delay and muscular hypotonia; autism was reported in two individuals. Three novel de novo variants in the TAOK1 gene (two likely gene-disruptive variants, one missense variant predicted to be probably damaging as defined by an MPC score > 2) were identified in ASD probands from the Autism Sequencing Consortium in Satterstrom et al., 2020; subsequent TADA analysis of de novo variants from the Simons Simplex Collection and the Autism Sequencing Consortium and protein-truncating variants from iPSYCH in this report identified TAOK1 as a candidate gene with a false discovery rate between 0.05 and 0.1 (0.05 < FDR 0.1). Additional de novo loss-of-function variants and potentially damaging missense variants in the TAOK1 gene were reported in ASD probands from the Simons Simplex Collection and the SPARK cohort in Zhou et al., 2022; a two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in this report identified TAOK1 as a gene reaching exome-wide significance (P < 2.5E-06).

Molecular Function

Serine/threonine-protein kinase involved in various processes such as p38/MAPK14 stress-activated MAPK cascade, DNA damage response and regulation of cytoskeleton stability.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
ADGRL1 haploinsufficiency causes a variable spectrum of neurodevelopmental disorders in humans and alters synaptic activity and behavior in a mouse model
DD, ID
Support
Inherited and de novo variants extend the etiology of TAOK1-associated neurodevelopmental disorder
DD, ID
ASD or autistic features, stereotypy
Support
TAOK1 is associated with neurodevelopmental disorder and essential for neuronal maturation and cortical development
DD, ID
ASD
Support
DD
Autistic features
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
ASD, ID
Recent Recommendation
ASD, DD, ID
Recent Recommendation
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
De Novo Variants in TAOK1 Cause Neurodevelopmental Disorders.
DD
ASD
Recent Recommendation
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1140R001 
 inframe_deletion 
 c.245_247del 
 p.Arg82del 
 De novo 
  
  
 GEN1140R002 
 missense_variant 
 c.50A>G 
 p.Glu17Gly 
 De novo 
  
  
 GEN1140R003 
 missense_variant 
 c.892A>G 
 p.Lys298Glu 
 De novo 
  
  
 GEN1140R004 
 stop_gained 
 c.2341G>T 
 p.Glu781Ter 
 De novo 
  
  
 GEN1140R005 
 missense_variant 
 c.914A>C 
 p.Asp305Ala 
 De novo 
  
  
 GEN1140R006 
 stop_gained 
 c.1630C>T 
 p.Gln544Ter 
 De novo 
  
  
 GEN1140R007 
 missense_variant 
 c.332C>T 
 p.Ser111Phe 
 De novo 
  
  
 GEN1140R008 
 frameshift_variant 
 c.2366_2367insC 
 p.Leu790PhefsTer3 
 De novo 
  
  
 GEN1140R009 
 stop_gained 
 c.2488G>T 
 p.Glu830Ter 
 De novo 
  
  
 GEN1140R010 
 stop_gained 
 c.136C>T 
 p.Arg46Ter 
 De novo 
  
 Simplex 
 GEN1140R011 
 frameshift_variant 
 c.2366_2367insC 
 p.Leu790PhefsTer3 
 De novo 
  
 Simplex 
 GEN1140R012 
 missense_variant 
 c.806G>A 
 p.Arg269Gln 
 De novo 
  
 Simplex 
 GEN1140R013 
 synonymous_variant 
 c.2520C>T 
 p.Leu840= 
 De novo 
  
 Simplex 
 GEN1140R014 
 frameshift_variant 
 c.2442del 
 p.Tyr815IlefsTer31 
 De novo 
  
  
 GEN1140R015 
 splice_site_variant 
 c.831+1dup 
  
 De novo 
  
  
 GEN1140R016 
 missense_variant 
 c.1643T>C 
 p.Leu548Pro 
 De novo 
  
  
 GEN1140R017 
 splice_site_variant 
 c.999+1dup 
  
 De novo 
  
  
 GEN1140R018 
 stop_gained 
 c.1819C>T 
 p.Gln607Ter 
 De novo 
  
  
 GEN1140R019 
 frameshift_variant 
 c.825_826insCT 
 p.Lys277Ter 
 De novo 
  
  
 GEN1140R020 
 stop_gained 
 c.658G>T 
 p.Glu220Ter 
 Familial 
 Maternal 
 Multiplex 
 GEN1140R021 
 stop_gained 
 c.2125C>T 
 p.Arg709Ter 
 Familial 
 Paternal 
  
 GEN1140R022 
 missense_variant 
 c.449G>T 
 p.Arg150Ile 
 De novo 
  
  
 GEN1140R023 
 missense_variant 
 c.500T>G 
 p.Leu167Arg 
 De novo 
  
  
 GEN1140R024 
 stop_gained 
 c.2083C>T 
 p.Arg695Ter 
 De novo 
  
  
 GEN1140R025 
 splice_site_variant 
 c.449+1G>C 
  
 De novo 
  
  
 GEN1140R026 
 frameshift_variant 
 c.393dup 
 p.Thr132TyrfsTer19 
 De novo 
  
  
 GEN1140R027 
 stop_gained 
 c.2104C>T 
 p.Arg702Ter 
 Unknown 
  
  
 GEN1140R028 
 missense_variant 
 c.943C>T 
 p.Leu315Phe 
 De novo 
  
  
 GEN1140R029 
 frameshift_variant 
 c.1287del 
 p.Lys429AsnfsTer42 
 De novo 
  
  
 GEN1140R030 
 frameshift_variant 
 c.232_233del 
 p.Lys78ValfsTer20 
 De novo 
  
  
 GEN1140R031 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1140R032 
 missense_variant 
 c.691A>G 
 p.Met231Val 
 Unknown 
  
  
 GEN1140R033 
 stop_gained 
 c.1813C>T 
 p.Arg605Ter 
 Unknown 
  
  
 GEN1140R034 
 copy_number_loss 
  
  
 Unknown 
  
  
 GEN1140R035 
 copy_number_loss 
  
  
 Familial 
 Maternal 
  
 GEN1140R036 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN1140R037 
 frameshift_variant 
 c.2203del 
 p.Arg735AspfsTer6 
 Familial 
 Maternal 
 Multiplex 
 GEN1140R038 
 splice_site_variant 
 c.132+3_132+6del 
  
 De novo 
  
  
 GEN1140R039 
 missense_variant 
 c.1324C>T 
 p.Arg442Trp 
 De novo 
  
 Simplex 
 GEN1140R040 
 stop_gained 
 c.564G>A 
 p.Trp188Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN1140R041 
 splice_region_variant 
 c.1203+8T>G 
  
 De novo 
  
 Simplex 
 GEN1140R042 
 missense_variant 
 c.497A>C 
 p.Lys166Thr 
 De novo 
  
  
 GEN1140R043 
 missense_variant 
 c.557C>T 
 p.Pro186Leu 
 De novo 
  
  
 GEN1140R044 
 missense_variant 
 c.704A>G 
 p.Tyr235Cys 
 De novo 
  
  
 GEN1140R045 
 frameshift_variant 
 c.881_884del 
 p.Ile294ArgfsTer7 
 De novo 
  
  
 GEN1140R046 
 inframe_indel 
 c.941_950delinsTGTG 
 p.Lys314_Phe317delinsMetCys 
 De novo 
  
  
 GEN1140R047 
 frameshift_variant 
 c.1287del 
 p.Lys429AsnfsTer42 
 De novo 
  
  
 GEN1140R048 
 stop_gained 
 c.2125C>T 
 p.Arg709Ter 
 De novo 
  
  
 GEN1140R049 
 synonymous_variant 
 c.2361C>T 
 p.Ala787%3D 
 De novo 
  
  
 GEN1140R050 
 frameshift_variant 
 c.1671dup 
 p.Glu558ArgfsTer3 
 De novo 
  
  
 GEN1140R051 
 missense_variant 
 c.470T>G 
 p.Ile157Ser 
 De novo 
  
  
 GEN1140R052 
 missense_variant 
 c.655G>A 
 p.Ala219Thr 
 De novo 
  
 Simplex 
 GEN1140R053 
 frameshift_variant 
 c.1941dup 
 p.Glu648ArgfsTer10 
 De novo 
  
 Simplex 
 GEN1140R054 
 missense_variant 
 c.593A>C 
 p.Asp198Ala 
 Familial 
 Paternal 
  
  et al.  
 GEN1140R055 
 stop_gained 
 c.1414C>T 
 p.Arg472Ter 
 Unknown 
 Not maternal 
  
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
17
Duplication
 3
 
17
Duplication
 2
 
17
Deletion-Duplication
 27
 

No Animal Model Data Available

No PIN Data Available
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