Summary Statistics:
ASD Reports: 14
Recent Reports: 5
Annotated variants: 95
Associated CNVs: 3
Evidence score: 4
Gene Score: S
Relevance to Autism
A de novo in-frame deletion variant in the TAOK1 gene was identified in an ASD proband from the Autism Sequencing Consortium (De Rubeis et al., 2014). Dulovic-Mahlow et al., 2019 described eight individuals with de novo TAOK1 variants who presented with a neurodevelopmental disorder characterized by developmental delay and muscular hypotonia; autism was reported in two individuals. Three novel de novo variants in the TAOK1 gene (two likely gene-disruptive variants, one missense variant predicted to be probably damaging as defined by an MPC score > 2) were identified in ASD probands from the Autism Sequencing Consortium in Satterstrom et al., 2020; subsequent TADA analysis of de novo variants from the Simons Simplex Collection and the Autism Sequencing Consortium and protein-truncating variants from iPSYCH in this report identified TAOK1 as a candidate gene with a false discovery rate between 0.05 and 0.1 (0.05 < FDR 0.1). Additional de novo loss-of-function variants and potentially damaging missense variants in the TAOK1 gene were reported in ASD probands from the Simons Simplex Collection and the SPARK cohort in Zhou et al., 2022; a two-stage analysis of rare de novo and inherited coding variants in 42,607 ASD cases, including 35,130 new cases from the SPARK cohort, in this report identified TAOK1 as a gene reaching exome-wide significance (P < 2.5E-06). Elkhateeb et al., 2025 recently reported 50 individuals with TAOK1 variants with associated phenotypes, including neurodevelopmental abnormalities (100%), macrocephaly (83%), and hypotonia (58%); autism spectrum disorder or autistic traits were reported in 31% of individuals with TAOK1 variants in this report.
Molecular Function
Serine/threonine-protein kinase involved in various processes such as p38/MAPK14 stress-activated MAPK cascade, DNA damage response and regulation of cytoskeleton stability.
References
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Exome sequencing improves the molecular diagnostics of paediatric unexplained neurodevelopmental disorders
ASD, ID
Support
ADGRL1 haploinsufficiency causes a variable spectrum of neurodevelopmental disorders in humans and alters synaptic activity and behavior in a mouse model
DD, ID
Support
Inherited and de novo variants extend the etiology of TAOK1-associated neurodevelopmental disorder
DD, ID
ASD or autistic features, stereotypy
Support
TAOK1 is associated with neurodevelopmental disorder and essential for neuronal maturation and cortical development
DD, ID
ASD
Support
Heterozygous truncating variant of TAOK1 in a boy with periventricular nodular heterotopia: a case report and literature review of TAOK1-related neurodevelopmental disorders
DD
Autistic features
Recent Recommendation
Expanding the phenotype and genotype spectrum of TAOK1 neurodevelopmental disorder and delineating TAOK2 neurodevelopmental disorder
DD, ID
ASD, ADHD, epilepsy/seizures
Recent Recommendation
ASD
Recent Recommendation
ASD, DD, ID
Recent Recommendation
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
De Novo Variants in TAOK1 Cause Neurodevelopmental Disorders.
DD
ASD
GEN1140R001
inframe_deletion
c.245_247del
p.Arg82del
De novo
GEN1140R002
missense_variant
c.50A>G
p.Glu17Gly
De novo
GEN1140R003
missense_variant
c.892A>G
p.Lys298Glu
De novo
GEN1140R004
stop_gained
c.2341G>T
p.Glu781Ter
De novo
GEN1140R005
missense_variant
c.914A>C
p.Asp305Ala
De novo
GEN1140R006
stop_gained
c.1630C>T
p.Gln544Ter
De novo
GEN1140R007
missense_variant
c.332C>T
p.Ser111Phe
De novo
GEN1140R008
frameshift_variant
c.2366_2367insC
p.Leu790PhefsTer3
De novo
GEN1140R009
stop_gained
c.2488G>T
p.Glu830Ter
De novo
GEN1140R010
stop_gained
c.136C>T
p.Arg46Ter
De novo
Simplex
GEN1140R011
frameshift_variant
c.2366_2367insC
p.Leu790PhefsTer3
De novo
Simplex
GEN1140R012
missense_variant
c.806G>A
p.Arg269Gln
De novo
Simplex
GEN1140R013
synonymous_variant
c.2520C>T
p.Leu840=
De novo
Simplex
GEN1140R014
frameshift_variant
c.2442del
p.Tyr815IlefsTer31
De novo
GEN1140R015
splice_site_variant
c.831+1dup
De novo
GEN1140R016
missense_variant
c.1643T>C
p.Leu548Pro
De novo
GEN1140R017
splice_site_variant
c.999+1dup
De novo
GEN1140R018
stop_gained
c.1819C>T
p.Gln607Ter
De novo
GEN1140R019
frameshift_variant
c.825_826insCT
p.Lys277Ter
De novo
GEN1140R020
stop_gained
c.658G>T
p.Glu220Ter
Familial
Maternal
Multiplex
GEN1140R021
stop_gained
c.2125C>T
p.Arg709Ter
Familial
Paternal
GEN1140R022
missense_variant
c.449G>T
p.Arg150Ile
De novo
GEN1140R023
missense_variant
c.500T>G
p.Leu167Arg
De novo
GEN1140R024
stop_gained
c.2083C>T
p.Arg695Ter
De novo
GEN1140R025
splice_site_variant
c.449+1G>C
De novo
GEN1140R026
frameshift_variant
c.393dup
p.Thr132TyrfsTer19
De novo
GEN1140R027
stop_gained
c.2104C>T
p.Arg702Ter
Unknown
GEN1140R028
missense_variant
c.943C>T
p.Leu315Phe
De novo
GEN1140R029
frameshift_variant
c.1287del
p.Lys429AsnfsTer42
De novo
GEN1140R030
frameshift_variant
c.232_233del
p.Lys78ValfsTer20
De novo
GEN1140R031
copy_number_loss
De novo
GEN1140R032
missense_variant
c.691A>G
p.Met231Val
Unknown
GEN1140R033
stop_gained
c.1813C>T
p.Arg605Ter
Unknown
GEN1140R034
copy_number_loss
Unknown
GEN1140R035
copy_number_loss
Familial
Maternal
GEN1140R036
copy_number_loss
De novo
Simplex
GEN1140R037
frameshift_variant
c.2203del
p.Arg735AspfsTer6
Familial
Maternal
Multiplex
GEN1140R038
splice_site_variant
c.132+3_132+6del
De novo
GEN1140R039
missense_variant
c.1324C>T
p.Arg442Trp
De novo
Simplex
GEN1140R040
stop_gained
c.564G>A
p.Trp188Ter
Familial
Paternal
Multiplex
GEN1140R041
splice_region_variant
c.1203+8T>G
De novo
Simplex
GEN1140R042
missense_variant
c.497A>C
p.Lys166Thr
De novo
GEN1140R043
missense_variant
c.557C>T
p.Pro186Leu
De novo
GEN1140R044
missense_variant
c.704A>G
p.Tyr235Cys
De novo
GEN1140R045
frameshift_variant
c.881_884del
p.Ile294ArgfsTer7
De novo
GEN1140R046
inframe_indel
c.941_950delinsTGTG
p.Lys314_Phe317delinsMetCys
De novo
GEN1140R047
frameshift_variant
c.1287del
p.Lys429AsnfsTer42
De novo
GEN1140R048
stop_gained
c.2125C>T
p.Arg709Ter
De novo
GEN1140R049
synonymous_variant
c.2361C>T
p.Ala787=
De novo
GEN1140R050
frameshift_variant
c.1671dup
p.Glu558ArgfsTer3
De novo
GEN1140R051
missense_variant
c.470T>G
p.Ile157Ser
De novo
GEN1140R052
missense_variant
c.655G>A
p.Ala219Thr
De novo
Simplex
GEN1140R053
frameshift_variant
c.1941dup
p.Glu648ArgfsTer10
De novo
Simplex
GEN1140R054
missense_variant
c.593A>C
p.Asp198Ala
Familial
Paternal
GEN1140R055
stop_gained
c.1414C>T
p.Arg472Ter
Unknown
Not maternal
GEN1140R056
stop_gained
c.1840G>T
p.Glu614Ter
De novo
Simplex
GEN1140R057
stop_gained
c.2092C>T
p.Arg698Ter
Familial
Maternal
Multiplex
GEN1140R058
copy_number_loss
Familial
Paternal
GEN1140R059
frameshift_variant
c.1436dup
p.Met479IlefsTer10
Unknown
Simplex
GEN1140R060
missense_variant
c.1101T>A
p.Ser367Arg
Familial
Maternal
GEN1140R061
splice_site_variant
c.750-1G>A
p.?
De novo
Unknown
GEN1140R062
stop_gained
c.1414C>T
p.Arg472Ter
Familial
Paternal
Simplex
GEN1140R063
missense_variant
c.512G>C
p.Gly171Ala
Unknown
Simplex
GEN1140R064
frameshift_variant
c.1394_1401dup
p.Lys468LeufsTer6
Familial
Maternal
Simplex
GEN1140R065
frameshift_variant
c.943dup
p.Leu315ProfsTer8
De novo
Simplex
GEN1140R066
missense_variant
c.427C>T
p.His143Tyr
De novo
Simplex
GEN1140R067
missense_variant
c.750G>T
p.Trp250Cys
Familial
Maternal
Multiplex
GEN1140R068
missense_variant
c.499C>T
p.Leu167Phe
Unknown
Multiplex
GEN1140R069
missense_variant
c.70C>A
p.Pro24Thr
Unknown
Unknown
GEN1140R070
missense_variant
c.656C>T
p.Ala219Val
Unknown
Unknown
GEN1140R071
stop_gained
c.627G>A
p.Trp209Ter
Unknown
Unknown
GEN1140R072
missense_variant
c.620A>T
p.Asp207Val
Unknown
GEN1140R073
stop_gained
c.2485C>T
p.Arg829Ter
Familial
Paternal
GEN1140R074
missense_variant
c.554C>T
p.Thr185Met
Unknown
Simplex
GEN1140R075
frameshift_variant
c.1102_1103del
p.Val368Ter
Unknown
GEN1140R076
stop_gained
c.2485C>T
p.Arg829Ter
Familial
Paternal
Simplex
GEN1140R077
stop_gained
c.2593C>T
p.Arg865Ter
Familial
Maternal
GEN1140R078
missense_variant
c.2663G>T
p.Ser888Ile
De novo
Simplex
GEN1140R079
stop_gained
c.1387C>T
p.Gln463Ter
Unknown
Simplex
GEN1140R080
splice_site_variant
c.831+1G>A
p.?
De novo
Simplex
GEN1140R081
copy_number_loss
Unknown
Simplex
GEN1140R082
missense_variant
c.170A>C
p.Lys57Thr
De novo
Simplex
GEN1140R083
stop_gained
c.2092C>T
p.Arg698Ter
De novo
Simplex
GEN1140R084
splice_site_variant
c.306+2T>C
p.?
Unknown
Multiplex
GEN1140R085
missense_variant
c.785T>C
p.Leu262Pro
De novo
Simplex
GEN1140R086
missense_variant
c.2428G>A
p.Glu810Lys
Unknown
Simplex
GEN1140R087
copy_number_loss
c.-188_655del
p.?
Unknown
Simplex
GEN1140R088
stop_gained
c.1813C>T
p.Arg605Ter
Familial
Maternal
Multiplex
GEN1140R089
stop_gained
c.1414C>T
p.Arg472Ter
De novo
Simplex
GEN1140R090
frameshift_variant
c.1916dup
p.Asn639LysfsTer19
Unknown
Not maternal
Multiplex
GEN1140R091
missense_variant
c.878T>G
p.Leu293Arg
De novo
Simplex
GEN1140R092
missense_variant
c.2306C>G
p.Ala769Gly
Familial
Paternal
GEN1140R093
stop_gained
c.2410C>T
p.Gln804Ter
De novo
Simplex
GEN1140R094
copy_number_loss
De novo
Simplex
GEN1140R095
splice_region_variant
c.1909-7G>A
p.?
De novo
Simplex
No Common Variants Available
17
Deletion-Duplication
30
No Animal Model Data Available
No PIN Data Available