Summary Statistics:
ASD Reports: 26
Recent Reports: 4
Annotated variants: 67
Associated CNVs: 6
Evidence score: 4
Gene Score: 2S
Relevance to Autism
Two de novo variants in the TANC2 gene (one loss-of-function variant and one missense variant) were identified in ASD probands from the Simons Simplex Collection in Iossifov et al., 2014; additional de novo missense variants in this gene were subsequently identified in an ASD proband from the Autism Genetic Resource Exchange (AGRE) in Stessman et al., 2017 and an ASD proband from the Autism Sequencing Consortium in Lim et al., 2017. Guo et al., 2019 provided detailed clinical and genetic data for 20 patients with likely gene-disrupting mutations in TANC2 presenting with a neurodevelopmental disorder characterized by ASD or autistic features (15/20), intellectual disability (19/20), and childhood speech delay (18/20); of the 20 individuals assessed for ASD, seven cases had a formal ASD diagnosis, while eight cases had clinical impression of ASD or Rett-like features. Additional de novo loss-of-function variants in TANC2 have been reported in ASD probands from the SPARK cohort, the Autism Sequencing Consortium, and a Korean ASD cohort (Zhou et al., 2022; Kim et al., 2024).
Molecular Function
This gene encodes a protien of unknown function.
References
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Genetic diagnostic outcomes from a 10-year research programme in autism in Aotearoa New Zealand
ASD
Support
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Genetic variants and phenotypic data curated for the CAGI6 intellectual disability panel challenge
ASD/autistic traits
ID
Support
Excess of rare, inherited truncating mutations in autism.
ASD
Support
Post-synaptic scaffold protein TANC2 in psychiatric and somatic disease risk
Support
Genomic reanalysis of a pan-European rare-disease resource yields new diagnoses
ASD, DD, ID
Support
De novo mutations in schizophrenia implicate synaptic networks.
SCZ
Support
Expanding the electroclinical spectrum of TANC2-related disorders: Lennox-Gastaut syndrome and related developmental epileptic phenotypes.
ID, epilepsy/seizures
ASD, DD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Genomic insights from a deeply phenotyped highly consanguineous neurodevelopmental disorders cohort
ASD, DD
Autistic behavior
Support
Diagnostic exome sequencing in persons with severe intellectual disability.
ID
Support
Genetic variants identification through whole-genome sequencing based on dried blood spots in 92 Chinese children with Autism.
ASD
Support
Combining exome/genome sequencing with data repository analysis reveals novel gene-disease associations for a wide range of genetic disorders
ASD, DD, ID, epilepsy/seizures
Support
Whole genome sequencing analysis identifies sex differences of familial pattern contributing to phenotypic diversity in autism
ASD
Support
Deleterious coding variation associated with autism is shared across ancestries.
ASD
Support
Regulation of KIF1A-Driven Dense Core Vesicle Transport: Ca2+/CaM Controls DCV Binding and Liprin-/TANC2 Recruits DCVs to Postsynaptic Sites.
ASD, ID
Support
De novo TANC2 stop-loss variant associated with developmental impairment and drug-resistant epilepsy.
ASD, ADHD, OCD, DD, ID, epilepsy/seizures
Support
Contribution of rare inherited and de novo variants in 2,871 congenital heart disease probands.
Congenital heart disease (CHD)
Neurodevelopmental disorders (NDD)
Recent Recommendation
A Statistical Framework for Mapping Risk Genes from De Novo Mutations in Whole-Genome-Sequencing Studies.
ASD
Recent Recommendation
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
ASD
Recent Recommendation
Genomic landscape of rare variants in a Chinese autism cohort and discovery of novel risk genes.
ASD
Recent Recommendation
Disruptive mutations in TANC2 define a neurodevelopmental syndrome associated with psychiatric disorders.
ASD or autistic features, DD, ID
Epilepsy/seizures
GEN878R001
stop_gained
c.3196C>T
p.Arg1066Ter
De novo
Simplex
GEN878R002
missense_variant
c.5066A>G
p.His1689Arg
De novo
Simplex
GEN878R003
missense_variant
c.2882G>A
p.Arg961Gln
De novo
GEN878R004
missense_variant
c.2278C>T
p.Arg760Cys
De novo
Simplex
GEN878R005
missense_variant
c.4556C>T
p.Pro1519Leu
De novo
Simplex
GEN878R006
stop_gained
c.333C>A
p.Tyr111Ter
De novo
GEN878R007
loss_of_function_variant
De novo
GEN878R008
missense_variant
De novo
GEN878R009
splicing_variant
De novo
GEN878R010
splice_site_variant
c.547+1G>A
Familial
Paternal
Simplex
GEN878R011
missense_variant
c.2381C>T
p.Ala794Val
De novo
Simplex
GEN878R012
splice_site_variant
c.1219+1G>A
De novo
Simplex
GEN878R013
splice_site_variant
c.1219+1G>A
De novo
GEN878R014
frameshift_variant
c.1589_1590del
p.Arg530LysfsTer5
De novo
GEN878R015
frameshift_variant
c.3828del
p.Glu1277LysfsTer7
De novo
GEN878R016
splice_site_variant
c.4016+2T>G
De novo
GEN878R017
stop_gained
c.4198C>T
p.Gln1400Ter
De novo
GEN878R018
frameshift_variant
c.4405del
p.Arg1469GlyfsTer6
De novo
GEN878R019
stop_gained
c.4447C>T
p.Gln1483Ter
De novo
GEN878R020
frameshift_variant
c.4449del
p.Gln1483HisfsTer69
De novo
GEN878R021
frameshift_variant
c.5319_5344dup
p.Phe1782CysfsTer6
De novo
GEN878R022
frameshift_variant
c.2781del
p.Ala928GlnfsTer4
Familial
Maternal
Multiplex
GEN878R023
frameshift_variant
c.2349_2350dup
p.Cys784SerfsTer22
Familial
Paternal
Simplex
GEN878R024
splice_site_variant
c.3543+1G>T
Familial
Maternal
Simplex
GEN878R025
frameshift_variant
c.4713_4716del
p.Gln1572PhefsTer41
Unknown
Unknown
GEN878R026
copy_number_loss
De novo
Simplex
GEN878R027
copy_number_loss
De novo
Simplex
GEN878R028
copy_number_loss
Familial
Paternal
Multiplex
GEN878R029
copy_number_loss
Unknown
Unknown
GEN878R030
missense_variant
c.2264G>A
p.Arg755His
De novo
GEN878R031
stop_gained
c.3067C>T
p.Arg1023Ter
Unknown
GEN878R032
frameshift_variant
c.747_748del
p.Leu251IlefsTer34
De novo
Simplex
GEN878R033
splice_site_variant
c.2470-1G>A
De novo
Unknown
GEN878R034
splice_site_variant
c.2470-1G>A
De novo
Unknown
GEN878R035
splice_site_variant
c.3016-1G>A
Unknown
Unknown
GEN878R036
splice_site_variant
c.3769-1G>C
Unknown
Simplex
GEN878R037
frameshift_variant
c.4586del
p.Pro1529GlnfsTer23
Familial
Maternal
Multiplex
GEN878R038
stop_gained
c.5515C>T
p.Arg1839Ter
Unknown
GEN878R039
missense_variant
c.916C>T
p.Arg306Cys
De novo
GEN878R040
frameshift_variant
c.1544dup
p.Arg516ProfsTer13
De novo
GEN878R041
frameshift_variant
c.946del
p.Ala316HisfsTer10
De novo
GEN878R042
stop_gained
c.2566C>T
p.Arg856Ter
De novo
Simplex
GEN878R043
frameshift_variant
c.1958_1961del
p.Val653GlyfsTer21
De novo
GEN878R044
stop_gained
c.3289C>T
p.Arg1097Ter
De novo
GEN878R045
missense_variant
c.1189G>T
p.Ala397Ser
Unknown
GEN878R046
missense_variant
c.3560A>G
p.Asp1187Gly
Unknown
GEN878R047
missense_variant
c.1364A>G
p.Tyr455Cys
Unknown
Unknown
GEN878R048
missense_variant
c.2978A>G
p.Gln993Arg
Unknown
Unknown
GEN878R049
stop_gained
c.4447C>T
p.Gln1483Ter
Unknown
Simplex
GEN878R050
missense_variant
c.127C>T
p.Arg43Cys
Unknown
GEN878R051
stop_lost
c.5971T>C
p.Ter1991GlnextTer29
De novo
Simplex
GEN878R052
missense_variant
c.860G>A
p.Arg287Lys
Unknown
GEN878R053
synonymous_variant
c.1665G>T
p.Gly555=
De novo
Simplex
GEN878R054
frameshift_variant
c.461dupC
p.Pro155SerfsTer5
De novo
GEN878R055
frameshift_variant
c.4606_4607del
p.Ala1537LeufsTer14
De novo
GEN878R056
stop_gained
c.2856C>A
p.Tyr952Ter
De novo
GEN878R057
missense_variant
c.787A>C
p.Met263Leu
De novo
Simplex
GEN878R058
missense_variant
c.787A>C
p.Met263Leu
De novo
Simplex
GEN878R059
stop_gained
c.2224C>T
p.Gln742Ter
De novo
Simplex
GEN878R060
stop_gained
c.2566C>T
p.Arg856Ter
De novo
Multiplex
GEN878R061
stop_gained
c.2566C>T
p.Arg856Ter
De novo
Simplex
GEN878R062
missense_variant
c.3467G>T
p.Gly1156Val
De novo
Simplex
GEN878R063
stop_gained
c.4156C>T
p.Gln1386Ter
De novo
Simplex
GEN878R064
stop_gained
c.4177G>T
p.Glu1393Ter
De novo
Multiplex
GEN878R065
frameshift_variant
c.4865_4866delinsT
p.His1623IlefsTer14
De novo
Unknown
GEN878R066
missense_variant
c.5836G>A
p.Asp1946Asn
De novo
Multiplex
GEN878R067
missense_variant
c.5951C>T
p.Pro1984Leu
De novo
Multiplex
No Common Variants Available
17
Deletion-Duplication
11
No Animal Model Data Available
No Interactions Available