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Relevance to Autism

Two de novo variants in the TANC2 gene (one loss-of-function variant and one missense variant) were identified in ASD probands from the Simons Simplex Collection in Iossifov et al., 2014; additional de novo missense variants in this gene were subsequently identified in an ASD proband from the Autism Genetic Resource Exchange (AGRE) in Stessman et al., 2017 and an ASD proband from the Autism Sequencing Consortium in Lim et al., 2017. Guo et al., 2019 provided detailed clinical and genetic data for 20 patients with likely gene-disrupting mutations in TANC2 presenting with a neurodevelopmental disorder characterized by ASD or autistic features (15/20), intellectual disability (19/20), and childhood speech delay (18/20); of the 20 individuals assessed for ASD, seven cases had a formal ASD diagnosis, while eight cases had clinical impression of ASD or Rett-like features. Additional de novo loss-of-function variants in TANC2 have been reported in ASD probands from the SPARK cohort, the Autism Sequencing Consortium, and a Korean ASD cohort (Zhou et al., 2022; Kim et al., 2024).

Molecular Function

This gene encodes a protien of unknown function.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Genetic diagnostic outcomes from a 10-year research programme in autism in Aotearoa New Zealand
ASD
Support
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Genetic variants and phenotypic data curated for the CAGI6 intellectual disability panel challenge
ASD/autistic traits
ID
Support
Excess of rare, inherited truncating mutations in autism.
ASD
Support
Post-synaptic scaffold protein TANC2 in psychiatric and somatic disease risk
Support
Genomic reanalysis of a pan-European rare-disease resource yields new diagnoses
ASD, DD, ID
Support
De novo mutations in schizophrenia implicate synaptic networks.
SCZ
Support
Expanding the electroclinical spectrum of TANC2-related disorders: Lennox-Gastaut syndrome and related developmental epileptic phenotypes.
ID, epilepsy/seizures
ASD, DD
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Genomic insights from a deeply phenotyped highly consanguineous neurodevelopmental disorders cohort
ASD, DD
Autistic behavior
Support
Diagnostic exome sequencing in persons with severe intellectual disability.
ID
Support
Genetic variants identification through whole-genome sequencing based on dried blood spots in 92 Chinese children with Autism.
ASD
Support
Combining exome/genome sequencing with data repository analysis reveals novel gene-disease associations for a wide range of genetic disorders
ASD, DD, ID, epilepsy/seizures
Support
Whole genome sequencing analysis identifies sex differences of familial pattern contributing to phenotypic diversity in autism
ASD
Support
Deleterious coding variation associated with autism is shared across ancestries.
ASD
Support
Regulation of KIF1A-Driven Dense Core Vesicle Transport: Ca2+/CaM Controls DCV Binding and Liprin-/TANC2 Recruits DCVs to Postsynaptic Sites.
ASD, ID
Support
De novo TANC2 stop-loss variant associated with developmental impairment and drug-resistant epilepsy.
ASD, ADHD, OCD, DD, ID, epilepsy/seizures
Support
Contribution of rare inherited and de novo variants in 2,871 congenital heart disease probands.
Congenital heart disease (CHD)
Neurodevelopmental disorders (NDD)
Recent Recommendation
A Statistical Framework for Mapping Risk Genes from De Novo Mutations in Whole-Genome-Sequencing Studies.
ASD
Recent Recommendation
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
ASD
Recent Recommendation
Genomic landscape of rare variants in a Chinese autism cohort and discovery of novel risk genes.
ASD
Recent Recommendation
Disruptive mutations in TANC2 define a neurodevelopmental syndrome associated with psychiatric disorders.
ASD or autistic features, DD, ID
Epilepsy/seizures

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN878R001 
 stop_gained 
 c.3196C>T 
 p.Arg1066Ter 
 De novo 
  
 Simplex 
 GEN878R002 
 missense_variant 
 c.5066A>G 
 p.His1689Arg 
 De novo 
  
 Simplex 
 GEN878R003 
 missense_variant 
 c.2882G>A 
 p.Arg961Gln 
 De novo 
  
  
 GEN878R004 
 missense_variant 
 c.2278C>T 
 p.Arg760Cys 
 De novo 
  
 Simplex 
 GEN878R005 
 missense_variant 
 c.4556C>T 
 p.Pro1519Leu 
 De novo 
  
 Simplex 
 GEN878R006 
 stop_gained 
 c.333C>A 
 p.Tyr111Ter 
 De novo 
  
  
 GEN878R007 
 loss_of_function_variant 
  
  
 De novo 
  
  
 GEN878R008 
 missense_variant 
  
  
 De novo 
  
  
 GEN878R009 
 splicing_variant 
  
  
 De novo 
  
  
 GEN878R010 
 splice_site_variant 
 c.547+1G>A 
  
 Familial 
 Paternal 
 Simplex 
 GEN878R011 
 missense_variant 
 c.2381C>T 
 p.Ala794Val 
 De novo 
  
 Simplex 
 GEN878R012 
 splice_site_variant 
 c.1219+1G>A 
  
 De novo 
  
 Simplex 
 GEN878R013 
 splice_site_variant 
 c.1219+1G>A 
  
 De novo 
  
  
 GEN878R014 
 frameshift_variant 
 c.1589_1590del 
 p.Arg530LysfsTer5 
 De novo 
  
  
 GEN878R015 
 frameshift_variant 
 c.3828del 
 p.Glu1277LysfsTer7 
 De novo 
  
  
 GEN878R016 
 splice_site_variant 
 c.4016+2T>G 
  
 De novo 
  
  
 GEN878R017 
 stop_gained 
 c.4198C>T 
 p.Gln1400Ter 
 De novo 
  
  
 GEN878R018 
 frameshift_variant 
 c.4405del 
 p.Arg1469GlyfsTer6 
 De novo 
  
  
 GEN878R019 
 stop_gained 
 c.4447C>T 
 p.Gln1483Ter 
 De novo 
  
  
 GEN878R020 
 frameshift_variant 
 c.4449del 
 p.Gln1483HisfsTer69 
 De novo 
  
  
 GEN878R021 
 frameshift_variant 
 c.5319_5344dup 
 p.Phe1782CysfsTer6 
 De novo 
  
  
 GEN878R022 
 frameshift_variant 
 c.2781del 
 p.Ala928GlnfsTer4 
 Familial 
 Maternal 
 Multiplex 
 GEN878R023 
 frameshift_variant 
 c.2349_2350dup 
 p.Cys784SerfsTer22 
 Familial 
 Paternal 
 Simplex 
 GEN878R024 
 splice_site_variant 
 c.3543+1G>T 
  
 Familial 
 Maternal 
 Simplex 
 GEN878R025 
 frameshift_variant 
 c.4713_4716del 
 p.Gln1572PhefsTer41 
 Unknown 
  
 Unknown 
 GEN878R026 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN878R027 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN878R028 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN878R029 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN878R030 
 missense_variant 
 c.2264G>A 
 p.Arg755His 
 De novo 
  
  
 GEN878R031 
 stop_gained 
 c.3067C>T 
 p.Arg1023Ter 
 Unknown 
  
  
 GEN878R032 
 frameshift_variant 
 c.747_748del 
 p.Leu251IlefsTer34 
 De novo 
  
 Simplex 
 GEN878R033 
 splice_site_variant 
 c.2470-1G>A 
  
 De novo 
  
 Unknown 
 GEN878R034 
 splice_site_variant 
 c.2470-1G>A 
  
 De novo 
  
 Unknown 
 GEN878R035 
 splice_site_variant 
 c.3016-1G>A 
  
 Unknown 
  
 Unknown 
 GEN878R036 
 splice_site_variant 
 c.3769-1G>C 
  
 Unknown 
  
 Simplex 
 GEN878R037 
 frameshift_variant 
 c.4586del 
 p.Pro1529GlnfsTer23 
 Familial 
 Maternal 
 Multiplex 
 GEN878R038 
 stop_gained 
 c.5515C>T 
 p.Arg1839Ter 
 Unknown 
  
  
 GEN878R039 
 missense_variant 
 c.916C>T 
 p.Arg306Cys 
 De novo 
  
  
 GEN878R040 
 frameshift_variant 
 c.1544dup 
 p.Arg516ProfsTer13 
 De novo 
  
  
 GEN878R041 
 frameshift_variant 
 c.946del 
 p.Ala316HisfsTer10 
 De novo 
  
  
 GEN878R042 
 stop_gained 
 c.2566C>T 
 p.Arg856Ter 
 De novo 
  
 Simplex 
 GEN878R043 
 frameshift_variant 
 c.1958_1961del 
 p.Val653GlyfsTer21 
 De novo 
  
  
 GEN878R044 
 stop_gained 
 c.3289C>T 
 p.Arg1097Ter 
 De novo 
  
  
 GEN878R045 
 missense_variant 
 c.1189G>T 
 p.Ala397Ser 
 Unknown 
  
  
 GEN878R046 
 missense_variant 
 c.3560A>G 
 p.Asp1187Gly 
 Unknown 
  
  
 GEN878R047 
 missense_variant 
 c.1364A>G 
 p.Tyr455Cys 
 Unknown 
  
 Unknown 
 GEN878R048 
 missense_variant 
 c.2978A>G 
 p.Gln993Arg 
 Unknown 
  
 Unknown 
 GEN878R049 
 stop_gained 
 c.4447C>T 
 p.Gln1483Ter 
 Unknown 
  
 Simplex 
 GEN878R050 
 missense_variant 
 c.127C>T 
 p.Arg43Cys 
 Unknown 
  
  
 GEN878R051 
 stop_lost 
 c.5971T>C 
 p.Ter1991GlnextTer29 
 De novo 
  
 Simplex 
 GEN878R052 
 missense_variant 
 c.860G>A 
 p.Arg287Lys 
 Unknown 
  
  
 GEN878R053 
 synonymous_variant 
 c.1665G>T 
 p.Gly555= 
 De novo 
  
 Simplex 
 GEN878R054 
 frameshift_variant 
 c.461dupC 
 p.Pro155SerfsTer5 
 De novo 
  
  
 GEN878R055 
 frameshift_variant 
 c.4606_4607del 
 p.Ala1537LeufsTer14 
 De novo 
  
  
 GEN878R056 
 stop_gained 
 c.2856C>A 
 p.Tyr952Ter 
 De novo 
  
  
 GEN878R057 
 missense_variant 
 c.787A>C 
 p.Met263Leu 
 De novo 
  
 Simplex 
 GEN878R058 
 missense_variant 
 c.787A>C 
 p.Met263Leu 
 De novo 
  
 Simplex 
 GEN878R059 
 stop_gained 
 c.2224C>T 
 p.Gln742Ter 
 De novo 
  
 Simplex 
 GEN878R060 
 stop_gained 
 c.2566C>T 
 p.Arg856Ter 
 De novo 
  
 Multiplex 
 GEN878R061 
 stop_gained 
 c.2566C>T 
 p.Arg856Ter 
 De novo 
  
 Simplex 
 GEN878R062 
 missense_variant 
 c.3467G>T 
 p.Gly1156Val 
 De novo 
  
 Simplex 
 GEN878R063 
 stop_gained 
 c.4156C>T 
 p.Gln1386Ter 
 De novo 
  
 Simplex 
 GEN878R064 
 stop_gained 
 c.4177G>T 
 p.Glu1393Ter 
 De novo 
  
 Multiplex 
 GEN878R065 
 frameshift_variant 
 c.4865_4866delinsT 
 p.His1623IlefsTer14 
 De novo 
  
 Unknown 
 GEN878R066 
 missense_variant 
 c.5836G>A 
 p.Asp1946Asn 
 De novo 
  
 Multiplex 
 GEN878R067 
 missense_variant 
 c.5951C>T 
 p.Pro1984Leu 
 De novo 
  
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
17
Duplication
 1
 
17
Duplication
 1
 
17
Duplication
 1
 
17
Duplication
 1
 
17
Duplication
 1
 
17
Deletion-Duplication
 11
 

No Animal Model Data Available

 

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