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Relevance to Autism

A de novo loss-of-function variant in this gene was identified in an ASD proband from the Simons Simplex Collection in Iossifov et al., 2014. A likely damaging missense variant in this gene was subsequently identified in an ASD proband from the Autism Genetic Resource Exchange (AGRE) in Stessman et al., 2017.

Molecular Function

This gene encodes a protien of unknown function.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Rates, distribution and implications of postzygotic mosaic mutations in autism spectrum disorder.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Excess of rare, inherited truncating mutations in autism.
ASD
Support
Post-synaptic scaffold protein TANC2 in psychiatric and somatic disease risk
Support
De novo mutations in schizophrenia implicate synaptic networks.
SCZ
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Diagnostic exome sequencing in persons with severe intellectual disability.
ID
Support
Combining exome/genome sequencing with data repository analysis reveals novel gene-disease associations for a wide range of genetic disorders
ASD, DD, ID, epilepsy/seizures
Support
Regulation of KIF1A-Driven Dense Core Vesicle Transport: Ca2+/CaM Controls DCV Binding and Liprin-/TANC2 Recruits DCVs to Postsynaptic Sites.
ASD, ID
Support
Contribution of rare inherited and de novo variants in 2,871 congenital heart disease probands.
Congenital heart disease (CHD)
Neurodevelopmental disorders (NDD)
Recent Recommendation
Disruptive mutations in TANC2 define a neurodevelopmental syndrome associated with psychiatric disorders.
ASD or autistic features, DD, ID
Epilepsy/seizures
Recent Recommendation
A Statistical Framework for Mapping Risk Genes from De Novo Mutations in Whole-Genome-Sequencing Studies.
ASD
Recent Recommendation
Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN878R001 
 stop_gained 
 c.3196C>T 
 p.Arg1066Ter 
 De novo 
  
 Simplex 
 GEN878R002 
 missense_variant 
 c.5066A>G 
 p.His1689Arg 
 De novo 
  
 Simplex 
 GEN878R003 
 missense_variant 
 c.2882G>A 
 p.Arg961Gln 
 De novo 
  
  
 GEN878R004 
 missense_variant 
 c.2278C>T 
 p.Arg760Cys 
 De novo 
  
 Simplex 
 GEN878R005 
 missense_variant 
 c.4556C>T 
 p.Pro1519Leu 
 De novo 
  
 Simplex 
 GEN878R006 
 stop_gained 
 c.333C>A 
 p.Tyr111Ter 
 De novo 
  
  
 GEN878R007 
 loss_of_function_variant 
  
  
 De novo 
  
  
 GEN878R008 
 missense_variant 
  
  
 De novo 
  
  
 GEN878R009 
 splicing_variant 
  
  
 De novo 
  
  
 GEN878R010 
 splice_site_variant 
 c.547+1G>A 
  
 Familial 
 Paternal 
 Simplex 
 GEN878R011 
 missense_variant 
 c.2381C>T 
 p.Ala794Val 
 De novo 
  
 Simplex 
 GEN878R012 
 splice_site_variant 
 c.1219+1G>A 
  
 De novo 
  
 Simplex 
 GEN878R013 
 splice_site_variant 
 c.1219+1G>A 
  
 De novo 
  
  
 GEN878R014 
 frameshift_variant 
 c.1589_1590del 
 p.Arg530LysfsTer5 
 De novo 
  
  
 GEN878R015 
 frameshift_variant 
 c.3828del 
 p.Glu1277LysfsTer7 
 De novo 
  
  
 GEN878R016 
 splice_site_variant 
 c.4016+2T>G 
  
 De novo 
  
  
 GEN878R017 
 stop_gained 
 c.4198C>T 
 p.Gln1400Ter 
 De novo 
  
  
 GEN878R018 
 frameshift_variant 
 c.4405del 
 p.Arg1469GlyfsTer6 
 De novo 
  
  
 GEN878R019 
 stop_gained 
 c.4447C>T 
 p.Gln1483Ter 
 De novo 
  
  
 GEN878R020 
 frameshift_variant 
 c.4449del 
 p.Gln1483HisfsTer69 
 De novo 
  
  
 GEN878R021 
 frameshift_variant 
 c.5319_5344dup 
 p.Phe1782CysfsTer6 
 De novo 
  
  
 GEN878R022 
 frameshift_variant 
 c.2781del 
 p.Ala928GlnfsTer4 
 Familial 
 Maternal 
 Multiplex 
 GEN878R023 
 frameshift_variant 
 c.2349_2350dup 
 p.Cys784SerfsTer22 
 Familial 
 Paternal 
 Simplex 
 GEN878R024 
 splice_site_variant 
 c.3543+1G>T 
  
 Familial 
 Maternal 
 Simplex 
 GEN878R025 
 frameshift_variant 
 c.4713_4716del 
 p.Gln1572PhefsTer41 
 Unknown 
  
 Unknown 
 GEN878R026 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN878R027 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN878R028 
 copy_number_loss 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN878R029 
 copy_number_loss 
  
  
 Unknown 
  
 Unknown 
 GEN878R030 
 missense_variant 
 c.2264G>A 
 p.Arg755His 
 De novo 
  
  
 GEN878R031 
 stop_gained 
 c.3067C>T 
 p.Arg1023Ter 
 Unknown 
  
  
 GEN878R032 
 frameshift_variant 
 c.747_748del 
 p.Leu251IlefsTer34 
 De novo 
  
 Simplex 
 GEN878R033 
 splice_site_variant 
 c.2470-1G>A 
  
 De novo 
  
 Unknown 
 GEN878R034 
 splice_site_variant 
 c.2470-1G>A 
  
 De novo 
  
 Unknown 
 GEN878R035 
 splice_site_variant 
 c.3016-1G>A 
  
 Unknown 
  
 Unknown 
 GEN878R036 
 splice_site_variant 
 c.3769-1G>C 
  
 Unknown 
  
 Simplex 
 GEN878R037 
 frameshift_variant 
 c.4586del 
 p.Pro1529GlnfsTer23 
 Familial 
 Maternal 
 Multiplex 
 GEN878R038 
 stop_gained 
 c.5515C>T 
 p.Arg1839Ter 
 Unknown 
  
  
 GEN878R039 
 missense_variant 
 c.916C>T 
 p.Arg306Cys 
 De novo 
  
  
 GEN878R040 
 frameshift_variant 
 c.1544dup 
 p.Arg516ProfsTer13 
 De novo 
  
  
 GEN878R041 
 frameshift_variant 
 c.946del 
 p.Ala316HisfsTer10 
 De novo 
  
  
 GEN878R042 
 stop_gained 
 c.2566C>T 
 p.Arg856Ter 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
17
Duplication
 1
 
17
Duplication
 1
 
17
Duplication
 1
 
17
Duplication
 1
 
17
Duplication
 1
 
17
Deletion-Duplication
 11
 

No Animal Model Data Available

 

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