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Relevance to Autism

TAF5 was identified as an ASD candidate gene in Wilfert et al., 2021 based on the discovery of private likely gene-disruptive (LGD) variants in this highly constrained (pLI 0.99) gene that were exclusively transmitted to four ASD probands in four independent families. A de novo missense variant in this gene had previously been identified in an ASD proband from a simplex family from the ASD: Genomes to Outcome Study cohort (Yuen et al., 2016).

Molecular Function

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes an integral subunit of TFIID associated with all transcriptionally competent forms of that complex. This subunit interacts strongly with two TFIID subunits that show similarity to histones H3 and H4, and it may participate in forming a nucleosome

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Recent ultra-rare inherited variants implicate new autism candidate risk genes
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Genome-wide characteristics of de novo mutations in autism
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1277R001 
 frameshift_variant 
 c.1222del 
 p.Asp408IlefsTer25 
 Familial 
  
 Simplex 
 GEN1277R002 
 frameshift_variant 
 c.1947_1954del 
 p.Thr650AlafsTer8 
 Familial 
  
 Simplex 
 GEN1277R003 
 stop_gained 
 c.2213G>A 
 p.Trp738Ter 
 Familial 
  
 Simplex 
 GEN1277R004 
 frameshift_variant 
 c.9del 
 p.Leu4TrpfsTer12 
 Familial 
  
 Simplex 
 GEN1277R005 
 missense_variant 
 c.2204T>A 
 p.Val735Asp 
 De novo 
  
 Simplex 
 GEN1277R006 
 missense_variant 
 c.375G>C 
 p.Glu125Asp 
 De novo 
  
 Simplex 
 GEN1277R007 
 synonymous_variant 
 c.1038G>A 
 p.Pro346%3D 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
10
Duplication
 1
 
10
Duplication
 1
 
10
Duplication
 1
 
10
Duplication
 2
 
10
Deletion
 1
 
10
Duplication
 1
 

No Animal Model Data Available

 

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