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Relevance to Autism

A de novo missense variant in the SYT1 gene that was predicted to be damaging was detected in an ASD proband from the Autism Sequencing Consortium (De Rubeis et al., 2014). Baker et al., 2018 described 11 individuals with de novo SYT1 missense variants that presented with a neurodevelopmental disorder characterized by infantile hypotonia, congenital ophthalmic abnormalities, childhood-onset hyperkinetic movements disorder, motor stereotypies, and developmental delay; impaired social development was also a common feature, with six of these individuals reportedly showing poor or no eye contact, limited interest in social interactions, and an absence of normal imitative behaviors.

Molecular Function

The synaptotagmins are integral membrane proteins of synaptic vesicles thought to serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Calcium binding to synaptotagmin-1 participates in triggering neurotransmitter release at the synapse.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
A single center experience with publicly funded clinical exome sequencing for neurodevelopmental disorders or multiple congenital anomalies
ADHD, DD, ID, epilepsy/seizures
Support
Baker-Gordon syndrome, DD, ID
Support
Molecular Basis for Synaptotagmin-1-Associated Neurodevelopmental Disorder
Baker-Gordon syndrome
Support
Baker-Gordon syndrome, DD, epilepsy/seizures
Autistic features, stereotypy
Support
Integrating de novo and inherited variants in 42
ASD
Support
Diagnostic yield of patients with undiagnosed intellectual disability
DD, ID
Support
Trio-based exome sequencing reveals a high rate of the de novo variants in intellectual disability
BPD, ID, epilepsy/seizures
Support
Expanding the genotype and phenotype spectrum of SYT1-associated neurodevelopmental disorder
DD
ASD, epilepsy/seizures
Support
DD
Autistic features
Recent Recommendation
SYT1-associated neurodevelopmental disorder: a case series.
DD, infantile hypotonia, behavioral abnormalities
Impaired social development, motor stereotypies

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1034R001 
 missense_variant 
 c.587C>G 
 p.Thr196Arg 
 De novo 
  
  
 GEN1034R002 
 missense_variant 
 c.908T>A 
 p.Met303Lys 
 De novo 
  
  
 GEN1034R003 
 missense_variant 
 c.911A>G 
 p.Asp304Gly 
 De novo 
  
  
 GEN1034R004 
 missense_variant 
 c.1103T>C 
 p.Ile368Thr 
 De novo 
  
  
 GEN1034R005 
 missense_variant 
 c.1103T>C 
 p.Ile368Thr 
 De novo 
  
  
 GEN1034R006 
 missense_variant 
 c.1103T>C 
 p.Ile368Thr 
 De novo 
  
  
 GEN1034R007 
 missense_variant 
 c.1103T>C 
 p.Ile368Thr 
 De novo 
  
  
 GEN1034R008 
 missense_variant 
 c.1098C>A 
 p.Asp366Glu 
 De novo 
  
  
 GEN1034R009 
 missense_variant 
 c.1098C>A 
 p.Asp366Glu 
 De novo 
  
  
 GEN1034R010 
 missense_variant 
 c.1098C>A 
 p.Asp366Glu 
 De novo 
  
  
 GEN1034R011 
 missense_variant 
 c.1113C>G 
 p.Asn371Lys 
 De novo 
  
  
 GEN1034R012 
 missense_variant 
 c.1113C>G 
 p.Asn371Lys 
 De novo 
  
  
 GEN1034R013 
 missense_variant 
 c.911A>G 
 p.Asp304Gly 
 De novo 
  
  
 GEN1034R014 
 missense_variant 
  
 p.Asp366Glu 
 De novo 
  
  
 GEN1034R015 
 stop_gained 
 c.1198C>T 
 p.Arg400Ter 
 De novo 
  
 Simplex 
 GEN1034R016 
 missense_variant 
 c.476T>G 
 p.Leu159Arg 
 De novo 
  
  
 GEN1034R017 
 missense_variant 
 c.587C>A 
 p.Thr196Lys 
 De novo 
  
  
 GEN1034R018 
 missense_variant 
 c.625G>A 
 p.Glu209Lys 
 De novo 
  
  
 GEN1034R019 
 missense_variant 
 c.655G>C 
 p.Glu219Gln 
 De novo 
  
  
 GEN1034R020 
 missense_variant 
 c.907A>G 
 p.Met303Val 
 De novo 
  
  
 GEN1034R021 
 missense_variant 
 c.925T>C 
 p.Ser309Pro 
 De novo 
  
  
 GEN1034R022 
 missense_variant 
 c.1022A>G 
 p.Asn341Ser 
 De novo 
  
  
 GEN1034R023 
 missense_variant 
 c.1094A>G 
 p.Tyr365Cys 
 De novo 
  
  
 GEN1034R024 
 inframe_insertion 
 c.1100_1102dup 
 p.Lys367dup 
 De novo 
  
  
 GEN1034R025 
 missense_variant 
 c.1103T>C 
 p.Ile368Thr 
 De novo 
  
  
 GEN1034R026 
 missense_variant 
 c.1106G>A 
 p.Gly369Asp 
 De novo 
  
  
 GEN1034R027 
 missense_variant 
 c.928G>C 
 p.Asp310His 
 De novo 
  
  
 GEN1034R028 
 missense_variant 
 c.1103T>C 
 p.Ile368Thr 
 De novo 
  
  
 GEN1034R029 
 missense_variant 
 c.10G>A 
 p.Glu4Lys 
 De novo 
  
  
 GEN1034R030 
 missense_variant 
 c.844C>T 
 p.Arg282Cys 
 De novo 
  
  
 GEN1034R031 
 missense_variant 
 c.1094A>G 
 p.Tyr365Cys 
 De novo 
  
  
 GEN1034R032 
 inframe_insertion 
 c.1101_1103dup 
 p.Lys367_Ile368insMet 
 De novo 
  
  
  et al.  
 GEN1034R033 
 missense_variant 
 c.1103T>C 
 p.Ile368Thr 
 De novo 
  
 Simplex 
  et al.  
 GEN1034R034 
 missense_variant 
 c.1202C>T 
 p.Pro401Leu 
 De novo 
  
 Simplex 
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
12
Duplication
 1
 
12
Duplication
 3
 
12
Deletion
 1
 
12
Duplication
 6
 

No Animal Model Data Available

No PIN Data Available
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