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Relevance to Autism

A de novo in-frame variant in the SYNCRIP gene was identified in an ASD proband from the Simons Simplex Collection in Krumm et al., 2015. Whole genome sequencing of a cohort of 180 simplex and multiplex ASD families in Guo et al., 2018 identified two rare de novo missense variants in the SYNCRIP gene in ASD probands; statistical analysis demonstrated that the probability of finding two de novo missense variants within this gene in this cohort was significantly low (P = 8.7E-07, adjusted P-value 0.02, one-tailed binomial test). De novo loss-of-function variants in the SYNCRIP gene have also been observed in individuals with developmental delay and/or intellectual disability (Rauch et al., 2012; Lelieveld et al., 2016; Deciphering Developmental Disorders Study 2017); additional phenotypic characterization of these individuals in Gillentine et al., 2021 found that one of these individuals presented with autism spectrum disorder in addition to developmental delay and intellectual disability. Genetic and phenotypic characterization of 27 individuals with SYNCRIP variants in Gillentine et al., 2021 found that affected individuals frequently presented with developmental delay/intellectual disability/specific learning disability (23/27 patients) and autism spectrum disorder (15/26 patients).

Molecular Function

This gene encodes a member of the cellular heterogeneous nuclear ribonucleoprotein (hnRNP) family. hnRNPs are RNA binding proteins that complex with heterogeneous nuclear RNA (hnRNA) and regulate alternative splicing, polyadenylation, and other aspects of mRNA metabolism and transport. The encoded protein plays a role in multiple aspects of mRNA maturation and is associated with several multiprotein complexes including the apoB RNA editing-complex and survival of motor neurons (SMN) complex.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Excess of rare, inherited truncating mutations in autism.
ASD
Support
Meta-analysis of 2,104 trios provides support for 10 new genes for intellectual disability
ID
Support
Range of genetic mutations associated with severe non-syndromic sporadic intellectual disability: an exome sequencing study.
ID
Epilepsy/seizures
Support
DD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Further evidence for de novo variants in SYNCRIP as the cause of a neurodevelopmental disorder
DD, ID
ASD or autistic features, stereotypy, epilepsy/sei
Support
Inherited and multiple de novo mutations in autism/developmental delay risk genes suggest a multifactorial model.
ASD
Support
Prevalence and architecture of de novo mutations in developmental disorders
DD
Recent Recommendation
Rare deleterious mutations of HNRNP genes result in shared neurodevelopmental disorders
ASD, DD
ADHD, epilepsy/seizures
Recent Recommendation
Genome sequencing identifies multiple deleterious variants in autism patients with more severe phenotypes.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1053R001 
 inframe_indel 
 c.1196_1213dup 
 p.Gly399_Gly404dup 
 De novo 
  
 Simplex 
 GEN1053R002 
 missense_variant 
 c.629T>C 
 p.Phe210Ser 
 De novo 
  
 Simplex 
 GEN1053R003 
 missense_variant 
 NM_001159676.1:c.1574A>T 
 p.Gln525Leu 
 De novo 
  
 Simplex 
 GEN1053R004 
 frameshift_variant 
 c.932dup 
 p.Asp312ArgfsTer20 
 De novo 
  
  
 GEN1053R005 
 frameshift_variant 
 c.1247_1250del 
 p.Arg416LysfsTer148 
 De novo 
  
  
 GEN1053R006 
 frameshift_variant 
 c.327dup 
 p.Val110CysfsTer14 
 De novo 
  
  
 GEN1053R007 
 frameshift_variant 
 c.1353+207del 
  
 Unknown 
 Not maternal 
 Simplex 
 GEN1053R008 
 splice_site_variant 
 c.1281-1G>A 
  
 De novo 
  
  
 GEN1053R009 
 splice_site_variant 
 c.149-2A>G 
  
 De novo 
  
  
 GEN1053R010 
 frameshift_variant 
 c.201del 
 p.Phe67LeufsTer29 
 De novo 
  
  
 GEN1053R011 
 frameshift_variant 
 c.683dup 
 p.Glu229ArgfsTer4 
 De novo 
  
  
 GEN1053R012 
 missense_variant 
 c.429G>C 
 p.Lys143Asn 
 De novo 
  
  
 GEN1053R013 
 missense_variant 
 c.611G>A 
 p.Gly204Asp 
 Unknown 
  
  
 GEN1053R014 
 frameshift_variant 
 c.319_320insGGTGT 
 p.Tyr107TrpfsTer64 
 De novo 
  
  
 GEN1053R015 
 missense_variant 
 c.498C>G 
 p.Ser166Arg 
 Unknown 
  
  
 GEN1053R016 
 frameshift_variant 
 c.787_790del 
 p.Phe263AlafsTer3 
 De novo 
  
  
 GEN1053R017 
 frameshift_variant 
 c.560dup 
 p.Asn187LysfsTer8 
 De novo 
  
  
 GEN1053R018 
 frameshift_variant 
 c.1051_1052del 
 p.Glu351ArgfsTer8 
 De novo 
  
  
 GEN1053R019 
 frameshift_variant 
 c.921del 
 p.Phe307LeufsTer161 
 De novo 
  
  
 GEN1053R020 
 frameshift_variant 
 c.953_956del 
 p.Arg318LysfsTer149 
 De novo 
  
  
 GEN1053R021 
 frameshift_variant 
 c.980dup 
 p.Asn327LysfsTer5 
 De novo 
  
  
 GEN1053R022 
 stop_gained 
 c.1299T>G 
 p.Tyr433Ter 
 De novo 
  
  
 GEN1053R023 
 stop_gained 
 c.1336C>T 
 p.Arg446Ter 
 De novo 
  
  
 GEN1053R024 
 stop_gained 
 c.1416T>G 
 p.Tyr472Ter 
 De novo 
  
  
 GEN1053R025 
 missense_variant 
 c.1438G>A 
 p.Gly480Arg 
 Unknown 
 Not maternal 
  
 GEN1053R026 
 frameshift_variant 
 c.1196dup 
 p.Arg400LysfsTer4 
 Unknown 
 Not paternal 
  
 GEN1053R027 
 missense_variant 
 c.1595C>T 
 p.Ala532Val 
 Unknown 
  
  
 GEN1053R028 
 missense_variant 
 c.1648G>A 
 p.Val550Ile 
 Unknown 
  
  
 GEN1053R029 
 frameshift_variant 
 c.858_859del 
 p.Gly287LeufsTer5 
 De novo 
  
 Simplex 
 GEN1053R030 
 frameshift_variant 
 c.560dup 
 p.Asn187LysfsTer8 
 De novo 
  
 Simplex 
 GEN1053R031 
 missense_variant 
 c.734T>C 
 p.Leu245Pro 
 De novo 
  
  
 GEN1053R032 
 synonymous_variant 
 c.114A>G 
 p.Lys38%3D 
 De novo 
  
  
 GEN1053R033 
 frameshift_variant 
 c.787_790del 
 p.Phe263AlafsTer3 
 De novo 
  
 Simplex 
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
6
Deletion
 1
 
6
Deletion
 1
 
6
Deletion
 1
 
6
Deletion
 2
 
6
Deletion
 3
 
6
Deletion
 1
 
6
Duplication
 3
 
6
Deletion
 1
 
6
Deletion-Duplication
 13
 
6
Duplication
 1
 

No Animal Model Data Available

 

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