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Relevance to Autism

Integration of familial whole-exome datasets of 3,531 individuals from 1,704 simplex ASD families and 50 multiplex ASD families and expression data from the BrainSpan Atlas of the Developmental Human Brain in Luo et al., 2020 identified a neurodevelopmentally co-regulated, sex-differentially expressed cluster of exons enriched with ASD-segregating deleterious variants in the SYCE1 gene (Bonferroni-corrected cluster P-value of 6.43E-04).

Molecular Function

This gene encodes a member of the synaptonemal complex, which links homologous chromosomes during prophase I of meiosis. The tripartite structure of the complex is highly conserved amongst metazoans. It consists of two lateral elements and a central region formed by transverse elements and a central element. The protein encoded by this gene localizes to the central element and is required for initiation and elongation of the synapsis.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
A multidimensional precision medicine approach identifies an autism subtype characterized by dyslipidemia
ASD
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1213R001 
 downstream_gene_variant 
  
  
 Familial 
  
  
 GEN1213R002 
 stop_gained 
 c.880C>T 
 p.Gln294Ter 
 Familial 
  
  
 GEN1213R003 
 splice_site_variant 
 c.271+1G>A 
  
 Familial 
  
  
 GEN1213R004 
 stop_gained 
 c.943G>T 
 p.Glu315Ter 
 De novo 
  
  
 GEN1213R005 
 frameshift_variant 
 c.689_692del 
 p.Phe230SerfsTer24 
 Familial 
 Paternal 
 Multiplex 
 GEN1213R006 
 splice_site_variant 
 c.137-2A>G 
  
 Familial 
 Maternal 
 Multiplex 
 GEN1213R007 
 splice_site_variant 
 c.137-2A>G 
  
 Familial 
 Paternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
10
Duplication
 1
 
10
Duplication
 2
 
10
Duplication
 1
 
10
Duplication
 2
 
10
Duplication
 1
 
10
Deletion
 4
 
10
Deletion
 2
 
10
Deletion
 6
 
10
Deletion-Duplication
 16
 
10
Deletion-Duplication
 43
 

No Animal Model Data Available

 

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