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Relevance to Autism

A de novo missense variant that was predicted to be damaging was identifed in the SUPT16H gene in an ASD proband from the Simons Simplex Collection in Iossifov et al., 2014. Bina et al., 2020 identified five individuals with de novo variants affecting the SUPT16H gene, all of whom presenting with gross motor delay, delayed or absent speech, and cognitive delay/intellectual disability; two of the five individuals from this study also presented with autistic features. Microdeletions and microduplications involving the CHD8 and SUPT16H genes have also been observed in patients presenting with a spectrum of neurodevelopmental phenotypes, including ASD/autistic features (Drabova et al., 2015; Smyk et al., 2016; Yasin et al., 2019; Smol et al., 2020).

Molecular Function

The SUPT16H gene encodes for a component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Novel 14q11.2 microduplication including the CHD8 and SUPT16H genes associated with developmental delay.
Support
Long term follow-up in a patient with a de novo microdeletion of 14q11.2 involving CHD8.
Support
The fly homolog of SUPT16H, a gene associated with neurodevelopmental disorders, is required in a cell-autonomous fashion for cell survival
DD, ID, epilepsy/seizures
Support
Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder
ASD
Support
Neurodevelopmental phenotype associated with CHD8-SUPT16H duplication.
Support
A distinct neurodevelopmental syndrome with intellectual disability, autism spectrum disorder, characteristic facies, and macrocephaly is caused by...
Recent recommendation
De novo variants in SUPT16H cause neurodevelopmental disorders associated with corpus callosum abnormalities.
DD, ID
Autistic features

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1145R001 
 missense_variant 
 c.2078G>A 
 p.Arg693Gln 
 De novo 
  
 Simplex 
 GEN1145R002 
 missense_variant 
 c.2200C>T 
 p.Arg734Trp 
 De novo 
  
  
 GEN1145R003 
 missense_variant 
 c.1907A>G 
 p.Glu636Gly 
 De novo 
  
  
 GEN1145R004 
 missense_variant 
 c.1295T>C 
 p.Leu432Pro 
 De novo 
  
  
 GEN1145R005 
 missense_variant 
 c.484A>G 
 p.Ile162Val 
 De novo 
  
  
 GEN1145R006 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1145R007 
 missense_variant 
 c.977A>G 
 p.Tyr326Cys 
 Unknown 
  
  
 GEN1145R008 
 missense_variant 
 c.512C>T 
 p.Thr171Ile 
 De novo 
  
  
 GEN1145R009 
 missense_variant 
 c.2421C>T 
 p.Asn807%3D 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
14
Duplication
 1
 
14
Deletion-Duplication
 51
 
14
Duplication
 4
 
14
Duplication
 1
 
14
Deletion
 1
 

No Animal Model Data Available

 

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