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Relevance to Autism

Rare and potentially damaging missense variants in the SRSF1 gene have been previously identified in two ASD probands (Satterstrom et al., 2020; Zhou et al., 2022). Bogaert et al., 2023 identified a cohort of 17 individuals with heterozygous germline SRSF1 variants who presented with a neurodevelopmental syndrome characterized by developmental delay and intellectual disability, hypotonia, and neurobehavioral problems (includiing autistic features and/or stereotypy in a subset of affected individuals) with variable skeletal and cardiac abnormalities; functional assessment in Drosophila demonstrated that all loss-of-function variants and 5 out of 7 missense variants in this gene were pathogenic and resulted in loss of SRSF1 splicing activity, which correlated with a detectable and specific DNA methylation signature in blood-derived DNA from affected individuals.

Molecular Function

This gene encodes a member of the arginine/serine-rich splicing factor protein family. The encoded protein can either activate or repress splicing, depending on its phosphorylation state and its interaction partners.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
DD, ID
Autistic features, stereotypy, ADHD, epilepsy/seiz
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1395R001 
 missense_variant 
 c.58G>A 
 p.Val20Met 
 De novo 
  
  
 GEN1395R002 
 missense_variant 
 c.535A>G 
 p.Lys179Glu 
 De novo 
  
  
 GEN1395R003 
 frameshift_variant 
 c.377_378del 
 p.Ser126TrpfsTer17 
 Unknown 
 Not maternal 
 Simplex 
 GEN1395R004 
 missense_variant 
 c.478G>A 
 p.Val160Met 
 De novo (germline mosaicism) 
  
 Multiplex 
 GEN1395R005 
 missense_variant 
 c.478G>A 
 p.Val160Met 
 De novo 
  
 Simplex 
 GEN1395R006 
 frameshift_variant 
 c.579dup 
 p.Val194SerfsTer2 
 De novo 
  
 Simplex 
 GEN1395R007 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN1395R008 
 stop_gained 
 c.82C>T 
 p.Arg28Ter 
 De novo 
  
 Simplex 
 GEN1395R009 
 missense_variant 
 c.548A>G 
 p.His183Arg 
 De novo 
  
 Simplex 
 GEN1395R010 
 missense_variant 
 c.119G>T 
 p.Gly40Val 
 De novo 
  
 Simplex 
 GEN1395R011 
 stop_gained 
 c.97G>T 
 p.Glu33Ter 
 De novo 
  
 Simplex 
 GEN1395R012 
 frameshift_variant 
 c.601del 
 p.Ser201ValfsTer87 
 De novo 
  
 Simplex 
 GEN1395R013 
 missense_variant 
 c.208G>A 
 p.Ala70Thr 
 De novo 
  
 Simplex 
 GEN1395R014 
 missense_variant 
 c.71C>T 
 p.Pro24Leu 
 De novo 
  
 Simplex 
 GEN1395R015 
 stop_gained 
 c.231T>G 
 p.Tyr77Ter 
 De novo 
  
 Simplex 
 GEN1395R016 
 missense_variant 
 c.251T>G 
 p.Leu84Arg 
 De novo 
  
 Simplex 
 GEN1395R017 
 missense_variant 
 c.130G>A 
 p.Asp44Asn 
 De novo 
  
 Simplex 
 GEN1395R018 
 copy_number_loss 
  
  
 De novo 
  
 Simplex 
 GEN1395R019 
 missense_variant 
 c.58G>A 
 p.Val20Met 
 De novo 
  
 Multiplex (monozygotic twins) 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
17
Duplication
 1
 
17
Duplication
 1
 
17
Duplication
 1
 
17
Deletion-Duplication
 20
 

No Animal Model Data Available

 

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