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Relevance to Autism

Numerous de novo variants in the SRRM2 gene have been identified in ASD probands, including two de novo loss-of-function (LoF) variants and a number of de novo missense variants (De Rubeis et al., 2014; Iossifov et al., 2014; Krumm et al., 2015; Sanders et al., 2015; Yuen et al., 2016; Yuen et al., 2017; Turner et al., 2017; Takata et al., 2018; Feliciano et al., 2019; Satterstrom et al., 2020). Cuinat et al., 2022 reported 22 individuals with loss-of-function variants in SRRM2 presenting with a neurodevelopmental syndrome characterized by developmental delay, intellectual disability, features of autism spectrum disorder or attention deficit hyperactivity disorder, overfriendliness, generalized hypotonia, overweight/obesity, and dysmorphic facial features.

Molecular Function

Enables C2H2 zinc finger domain binding activity and protein N-terminus binding activity. Involved in mRNA splicing, via spliceosome. Located in Cajal body and nuclear speck. Part of U2-type catalytic step 2 spliceosome and U2-type precatalytic spliceosome. Biomarker of Parkinson's disease.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrative Analyses of De Novo Mutations Provide Deeper Biological Insights into Autism Spectrum Disorder.
ASD
Support
Genomic Patterns of De Novo Mutation in Simplex Autism
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Genome-wide characteristics of de novo mutations in autism
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Excess of rare, inherited truncating mutations in autism.
ASD
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Recent Recommendation
Loss-of-function variants in SRRM2 cause a neurodevelopmental disorder
DD, ID
Autistic features, ADHD features

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1338R001 
 frameshift_variant 
 c.2782_2785del 
 p.Arg928AlafsTer13 
 De novo 
  
  
 GEN1338R002 
 missense_variant 
 c.85C>T 
 p.Arg29Cys 
 De novo 
  
  
 GEN1338R003 
 missense_variant 
 c.5147C>A 
 p.Thr1716Asn 
 De novo 
  
  
 GEN1338R004 
 missense_variant 
 c.6509C>G 
 p.Thr2170Arg 
 De novo 
  
  
 GEN1338R005 
 missense_variant 
 c.4736C>A 
 p.Ser1579Tyr 
 De novo 
  
 Simplex 
 GEN1338R006 
 synonymous_variant 
 c.4533C>T 
 p.Thr1511= 
 De novo 
  
 Simplex 
 GEN1338R007 
 synonymous_variant 
 c.1467C>T 
 p.Thr489= 
 De novo 
  
 Simplex 
 GEN1338R008 
 3_prime_UTR_variant 
 c.*14G>T 
  
 De novo 
  
  
 GEN1338R009 
 missense_variant 
 c.2686C>T 
 p.Pro896Ser 
 De novo 
  
 Simplex 
 GEN1338R010 
 intron_variant 
 c.1033-388C>G 
  
 De novo 
  
 Multiplex 
 GEN1338R011 
 intron_variant 
 c.7734-304_7734-303insAGGAGA 
  
 De novo 
  
 Simplex 
 GEN1338R012 
 intron_variant 
 c.-31-58C>T 
  
 De novo 
  
 Simplex 
 GEN1338R013 
 missense_variant 
 c.4424G>A 
 p.Arg1475Lys 
 De novo 
  
 Simplex 
 GEN1338R014 
 stop_gained 
 c.6178C>T 
 p.Arg2060Ter 
 De novo 
  
 Simplex 
 GEN1338R015 
 missense_variant 
 c.4720C>T 
 p.Arg1574Trp 
 De novo 
  
  
 GEN1338R016 
 stop_gained 
 c.3346C>T 
 p.Gln1116Ter 
 De novo 
  
  
 GEN1338R017 
 frameshift_variant 
 c.2970_2971del 
 p.Gly991ValfsTer31 
 De novo 
  
  
 GEN1338R018 
 stop_gained 
 c.4913C>G 
 p.Ser1638Ter 
 De novo 
  
  
 GEN1338R019 
 frameshift_variant 
 c.6709dup 
 p.Ala2237GlyfsTer22 
 De novo 
  
  
 GEN1338R020 
 stop_gained 
 c.6127C>T 
 p.Arg2043Ter 
 De novo 
  
  
 GEN1338R021 
 stop_gained 
 c.4616C>A 
 p.Ser1539Ter 
 De novo 
  
  
 GEN1338R022 
 frameshift_variant 
 c.2782_2785del 
 p.Arg928AlafsTer13 
 De novo 
  
  
 GEN1338R023 
 frameshift_variant 
 c.4528_4529del 
 p.Leu1510TyrfsTer14 
 De novo 
  
  
 GEN1338R024 
 frameshift_variant 
 c.4512_4578del 
 p.Asn1506TrpfsTer20 
 De novo 
  
  
 GEN1338R025 
 frameshift_variant 
 c.7254_7257del 
 p.Met2419ProfsTer43 
 De novo 
  
  
 GEN1338R026 
 stop_gained 
 c.6265C>T 
 p.Arg2089Ter 
 De novo 
  
  
 GEN1338R027 
 frameshift_variant 
 c.4200_4203dup 
 p.Ile1402GlufsTer8 
 Unknown 
  
  
 GEN1338R028 
 frameshift_variant 
 c.3426_3427del 
 p.Ser1143PhefsTer15 
 De novo 
  
  
 GEN1338R029 
 stop_gained 
 c.1882C>T 
 p.Arg628Ter 
 De novo 
  
  
 GEN1338R030 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1338R031 
 stop_gained 
 c.5074C>T 
 p.Arg1692Ter 
 De novo 
  
  
 GEN1338R032 
 frameshift_variant 
 c.5410_5411dup 
 p.Ser1804ArgfsTer80 
 Unknown 
  
  
 GEN1338R033 
 frameshift_variant 
 c.6042_6043del 
 p.Arg2015ProfsTer4 
 De novo 
  
  
 GEN1338R034 
 frameshift_variant 
 c.2782_2785del 
 p.Arg928AlafsTer13 
 Familial 
 Paternal 
  
 GEN1338R035 
 stop_gained 
 c.58C>T 
 p.Gln20Ter 
 De novo 
  
  
 GEN1338R036 
 frameshift_variant 
 c.2214_2215del 
 p.Arg739LysfsTer48 
 De novo 
  
  
 GEN1338R037 
 copy_number_loss 
  
  
 De novo 
  
  
 GEN1338R038 
 missense_variant 
 c.2686C>T 
 p.Pro896Ser 
 De novo 
  
 Simplex 
 GEN1338R039 
 frameshift_variant 
 c.3551_3554del 
 p.Lys1184ThrfsTer54 
 De novo 
  
  
 GEN1338R040 
 synonymous_variant 
 c.7875C>T 
 p.Ser2625%3D 
 De novo 
  
 Simplex 
 GEN1338R041 
 stop_gained 
 c.187A>T 
 p.Lys63Ter 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
16
Deletion-Duplication
 68
 
16
Duplication
 3
 
16
Deletion-Duplication
 2
 
16
Deletion
 5
 

No Animal Model Data Available

 

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