Summary Statistics:
ASD Reports: 13
Recent Reports: 1
Annotated variants: 41
Associated CNVs: 4
Evidence score: 4
Gene Score:
Relevance to Autism
Numerous de novo variants in the SRRM2 gene have been identified in ASD probands, including two de novo loss-of-function (LoF) variants and a number of de novo missense variants (De Rubeis et al., 2014; Iossifov et al., 2014; Krumm et al., 2015; Sanders et al., 2015; Yuen et al., 2016; Yuen et al., 2017; Turner et al., 2017; Takata et al., 2018; Feliciano et al., 2019; Satterstrom et al., 2020). Cuinat et al., 2022 reported 22 individuals with loss-of-function variants in SRRM2 presenting with a neurodevelopmental syndrome characterized by developmental delay, intellectual disability, features of autism spectrum disorder or attention deficit hyperactivity disorder, overfriendliness, generalized hypotonia, overweight/obesity, and dysmorphic facial features.
Molecular Function
Enables C2H2 zinc finger domain binding activity and protein N-terminus binding activity. Involved in mRNA splicing, via spliceosome. Located in Cajal body and nuclear speck. Part of U2-type catalytic step 2 spliceosome and U2-type precatalytic spliceosome. Biomarker of Parkinson's disease.
References
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrative Analyses of De Novo Mutations Provide Deeper Biological Insights into Autism Spectrum Disorder.
ASD
Support
Genomic Patterns of De Novo Mutation in Simplex Autism
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Genome-wide characteristics of de novo mutations in autism
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Excess of rare, inherited truncating mutations in autism.
ASD
Support
Exome sequencing of 457 autism families recruited online provides evidence for autism risk genes
ASD
Recent Recommendation
Loss-of-function variants in SRRM2 cause a neurodevelopmental disorder
DD, ID
Autistic features, ADHD features
GEN1338R001
frameshift_variant
c.2782_2785del
p.Arg928AlafsTer13
De novo
GEN1338R002
missense_variant
c.85C>T
p.Arg29Cys
De novo
GEN1338R003
missense_variant
c.5147C>A
p.Thr1716Asn
De novo
GEN1338R004
missense_variant
c.6509C>G
p.Thr2170Arg
De novo
GEN1338R005
missense_variant
c.4736C>A
p.Ser1579Tyr
De novo
Simplex
GEN1338R006
synonymous_variant
c.4533C>T
p.Thr1511=
De novo
Simplex
GEN1338R007
synonymous_variant
c.1467C>T
p.Thr489=
De novo
Simplex
GEN1338R008
3_prime_UTR_variant
c.*14G>T
De novo
GEN1338R009
missense_variant
c.2686C>T
p.Pro896Ser
De novo
Simplex
GEN1338R010
intron_variant
c.1033-388C>G
De novo
Multiplex
GEN1338R011
intron_variant
c.7734-304_7734-303insAGGAGA
De novo
Simplex
GEN1338R012
intron_variant
c.-31-58C>T
De novo
Simplex
GEN1338R013
missense_variant
c.4424G>A
p.Arg1475Lys
De novo
Simplex
GEN1338R014
stop_gained
c.6178C>T
p.Arg2060Ter
De novo
Simplex
GEN1338R015
missense_variant
c.4720C>T
p.Arg1574Trp
De novo
GEN1338R016
stop_gained
c.3346C>T
p.Gln1116Ter
De novo
GEN1338R017
frameshift_variant
c.2970_2971del
p.Gly991ValfsTer31
De novo
GEN1338R018
stop_gained
c.4913C>G
p.Ser1638Ter
De novo
GEN1338R019
frameshift_variant
c.6709dup
p.Ala2237GlyfsTer22
De novo
GEN1338R020
stop_gained
c.6127C>T
p.Arg2043Ter
De novo
GEN1338R021
stop_gained
c.4616C>A
p.Ser1539Ter
De novo
GEN1338R022
frameshift_variant
c.2782_2785del
p.Arg928AlafsTer13
De novo
GEN1338R023
frameshift_variant
c.4528_4529del
p.Leu1510TyrfsTer14
De novo
GEN1338R024
frameshift_variant
c.4512_4578del
p.Asn1506TrpfsTer20
De novo
GEN1338R025
frameshift_variant
c.7254_7257del
p.Met2419ProfsTer43
De novo
GEN1338R026
stop_gained
c.6265C>T
p.Arg2089Ter
De novo
GEN1338R027
frameshift_variant
c.4200_4203dup
p.Ile1402GlufsTer8
Unknown
GEN1338R028
frameshift_variant
c.3426_3427del
p.Ser1143PhefsTer15
De novo
GEN1338R029
stop_gained
c.1882C>T
p.Arg628Ter
De novo
GEN1338R030
copy_number_loss
De novo
GEN1338R031
stop_gained
c.5074C>T
p.Arg1692Ter
De novo
GEN1338R032
frameshift_variant
c.5410_5411dup
p.Ser1804ArgfsTer80
Unknown
GEN1338R033
frameshift_variant
c.6042_6043del
p.Arg2015ProfsTer4
De novo
GEN1338R034
frameshift_variant
c.2782_2785del
p.Arg928AlafsTer13
Familial
Paternal
GEN1338R035
stop_gained
c.58C>T
p.Gln20Ter
De novo
GEN1338R036
frameshift_variant
c.2214_2215del
p.Arg739LysfsTer48
De novo
GEN1338R037
copy_number_loss
De novo
GEN1338R038
missense_variant
c.2686C>T
p.Pro896Ser
De novo
Simplex
GEN1338R039
frameshift_variant
c.3551_3554del
p.Lys1184ThrfsTer54
De novo
GEN1338R040
synonymous_variant
c.7875C>T
p.Ser2625%3D
De novo
Simplex
GEN1338R041
stop_gained
c.187A>T
p.Lys63Ter
De novo
No Common Variants Available
16
Deletion-Duplication
68
16
Deletion-Duplication
2
No Animal Model Data Available
No Interactions Available