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Relevance to Autism

A number of predicted loss-of-function and damaging missense variants in the SPARCL1 gene, including a de novo LoF variant, were observed in ASD probands from the Autism Sequencing Consortium (De Rubeis et al., 2014). The protein encoded by the SPARCL1 gene, hevin, was shown to induce thalamocortical synapse formation by bridging neurexin 1 -alpha and neuroligin 1-beta following secretion from astrocytes (Singh et al., 2016). Functional analysis of the ASD-associated SPARCL1 p.Trp647Arg missense variant in Taketomi et al., 2022 demonstrated that this mutation impaired normal Hevin secretion and resulted in accumulation of protein in the endoplasmic reticulum, leading to activation of unfolded protein responses.

Molecular Function

Predicted to enable calcium ion binding activity; collagen binding activity; and extracellular matrix binding activity. Predicted to be involved in anatomical structure development and regulation of synapse organization. Located in extracellular space.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Autism-associated mutation in Hevin/Sparcl1 induces endoplasmic reticulum stress through structural instability
ASD
Support
Postmortem brain abnormalities of the glutamate neurotransmitter system in autism.
ASD
Recent Recommendation
Astrocytes Assemble Thalamocortical Synapses by Bridging NRX1 and NL1 via Hevin.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN793R001 
 stop_gained 
 c.151G>T 
 p.Glu51Ter 
 De novo 
  
  
 GEN793R002 
 frameshift_variant 
 c.1842del 
 p.Pro615LeufsTer13 
 Familial 
 Paternal 
  
 GEN793R003 
 missense_variant 
 c.1462A>T 
 p.Thr488Ser 
 Familial 
 Paternal 
  
 GEN793R004 
 missense_variant 
 c.1462A>T 
 p.Thr488Ser 
 Familial 
 Maternal 
  
 GEN793R005 
 missense_variant 
 c.1382C>T 
 p.Thr461Ile 
 Familial 
 Paternal 
  
 GEN793R006 
 missense_variant 
 c.1427A>G 
 p.Asn476Ser 
 Familial 
 Maternal 
  
 GEN793R007 
 missense_variant 
 c.719C>G 
 p.Ser240Cys 
 Familial 
 Maternal 
  
 GEN793R008 
 missense_variant 
 c.1939T>C 
 p.Trp647Arg 
 Familial 
 Maternal 
  
 GEN793R009 
 missense_variant 
 c.1761G>A 
 p.Met587Ile 
 Familial 
 Paternal 
  
 GEN793R010 
 stop_gained 
 c.496C>T 
 p.Gln166Ter 
 Unknown 
  
 Unknown 
 GEN793R011 
 missense_variant 
 c.1547C>T 
 p.Thr516Met 
 Unknown 
  
 Unknown 
 GEN793R012 
 missense_variant 
 c.1462A>T 
 p.Thr488Ser 
 Unknown 
  
 Unknown 
 GEN793R013 
 missense_variant 
 c.1939T>C 
 p.Trp647Arg 
 Unknown 
  
 Unknown 
 GEN793R014 
 missense_variant 
 c.1828C>T 
 p.His610Tyr 
 Unknown 
  
 Unknown 
 GEN793R015 
 missense_variant 
 c.1256C>T 
 p.Thr419Met 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
4
Duplication
 1
 
4
Deletion
 1
 
4
Deletion
 1
 
4
Deletion
 1
 

No Animal Model Data Available



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