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Relevance to Autism

SOS2 was identified as an ASD candidate gene in Wilfert et al., 2021 based on the discovery of private likely gene-disruptive (LGD) variants in this highly constrained (pLI 0.99) gene that were exclusively transmitted to three ASD probands in two independent families and its interconnectedness with other ASD candidate genes in protein-protein interaction (PPI) networks in this report. A de novo missense variant in this gene had previously been identified in an ASD proband from the Autism Sequencing Consortium (Satterstrom et al., 2020).

Molecular Function

This gene encodes a regulatory protein that is involved in the positive regulation of ras proteins. Heterozygous mutations in the SOS2 gene are associated with Noonan syndrome-9 (NS9; OMIM 616559), an autosomal dominant disorder characterized by short stature, craniofacial dysmorphism, short and/or webbed neck, cardiac abnormalities, cryptorchidism, and coagulation defects.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Recent ultra-rare inherited variants implicate new autism candidate risk genes
ASD
Support
Rare variants in SOS2 and LZTR1 are associated with Noonan syndrome.
Noonan syndrome-9
Support
Integrating de novo and inherited variants in 42
ASD
Support
Impaired Neurodevelopmental Genes in Slovenian Autistic Children Elucidate the Comorbidity of Autism With Other Developmental Disorders
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Activating Mutations Affecting the Dbl Homology Domain of SOS2 Cause Noonan Syndrome
Noonan syndrome-9

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1283R001 
 stop_gained 
 c.673C>T 
 p.Arg225Ter 
 Familial 
  
  
 GEN1283R002 
 frameshift_variant 
 c.133_136del 
 p.Leu45IlefsTer6 
 Familial 
  
  
 GEN1283R003 
 missense_variant 
 c.3860C>G 
 p.Pro1287Arg 
 De novo 
  
  
 GEN1283R004 
 missense_variant 
 c.791C>A 
 p.Thr264Lys 
 De novo 
  
  
 GEN1283R005 
 synonymous_variant 
 c.702G>A 
 p.Leu234%3D 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
14
Deletion-Duplication
 14
 
14
Deletion
 2
 
14
Deletion-Duplication
 6
 

No Animal Model Data Available

 

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