Summary Statistics:
ASD Reports: 24
Recent Reports: 2
Annotated variants: 85
Associated CNVs: 5
Evidence score: 4
Gene Score: S
Relevance to Autism
De novo missense variants in the SON gene have been identified in ASD probands from the Simons Simplex Collection (Iossifov et al., 2014) and the iHART cohort (Ruzzo et al., 2019). Mutations in the SON gene are also responsible for ZTTK syndrome (OMIM 617140), a severe multisystem developmental disorder characterized by delayed psychomotor development and intellectual disability; autism and autistic features have been observed in a subset of individuals with this disorder (Tokita et al., 2016; Kim et al., 2016).
Molecular Function
This gene encodes a protein that contains multiple simple repeats. The encoded protein binds RNA and promotes pre-mRNA splicing, particularly of transcripts with poor splice sites. The protein also recognizes a specific DNA sequence found in the human hepatitis B virus (HBV) and represses HBV core promoter activity.
References
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
De Novo Truncating Variants in SON Cause Intellectual Disability, Congenital Malformations, and Failure to Thrive.
ZTTK syndrome
ASD
Support
ZTTK syndrome, DD, epilepsy/seizures
Stereotypy
Support
Skin and nails abnormalities in a patient with ZTTK syndrome and a de novo mutation in SON
ID, epilepsy/seizures
ID, epilepsy/seizures
Support
Next-generation gene panel testing in adolescents and adults in a medical neuropsychiatric genetics clinic
ID
DD, epilepsy/seizures
Support
Establishing SON in 21q22.11 as a cause a new syndromic form of intellectual disability: Possible contribution to Braddock-Carey syndrome phenotype
DD, ID
DD, ID
Support
Autism risk in offspring can be assessed through quantification of male sperm mosaicism.
ASD
Support
ZTTK syndrome: Clinical and molecular findings of 15 cases and a review of the literature
ZTTKsyndrome, DD, ID, epilepsy/seizures
ADHD, stereotypy
Support
Clinical and genetic analysis of ZTTK syndrome caused by SON heterozygous mutation c.394C>T
DD, ID
DD, ID
Support
Comorbidities associated with genetic abnormalities in children with intellectual disability
ASD, DD/ID
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Phenotypic expansion in Zhu-Tokita-Takenouchi-Kim syndrome caused by de novo variants in the SON gene
ZTTK syndrome, DD
ID, stereotypy
Support
Integrating de novo and inherited variants in 42
ASD
Support
SON haploinsufficiency causes impaired pre-mRNA splicing of CAKUT genes and heterogeneous renal phenotypes
ID
ID
Support
Knockdown of Son, a mouse homologue of the ZTTK syndrome gene, causes neuronal migration defects and dendritic spine abnormalities
ZTTK syndrome
Support
Complex Diagnostics of Non-Specific Intellectual Developmental Disorder
DD, ID
Support
De Novo Mutations in SON Disrupt RNA Splicing of Genes Essential for Brain Development and Metabolism, Causing an Intellectual-Disability Syndrome.
ZTTK syndrome
ASD or autistic features
Support
A novel frameshift variant in SON causes Zhu-Tokita-Takenouchi-Kim Syndrome
DD, ID
DD, ID
Recent Recommendation
Craniosynostosis
Recent Recommendation
Establishing the phenotypic spectrum of ZTTK syndrome by analysis of 52 individuals with variants in SON
DD, ID
Epilepsy/seizures, ASD or autistic features
GEN1139R001
missense_variant
c.3724T>G
p.Ser1242Ala
De novo
Simplex
GEN1139R002
missense_variant
c.5515C>T
p.Arg1839Cys
De novo
Multiplex
GEN1139R003
frameshift_variant
c.5753_5756delTTAG
p.Val1918GlufsTer87
De novo
Simplex
GEN1139R004
frameshift_variant
c.6233del
p.Pro2078HisfsTer4
De novo
Simplex
GEN1139R005
frameshift_variant
c.3852_3856del
p.Met1284IlefsTer2
De novo
Simplex
GEN1139R006
stop_gained
c.286C>T
p.Gln96Ter
De novo
GEN1139R007
frameshift_variant
c.5753_5756delTTAG
p.Val1918GlufsTer87
De novo
Simplex
GEN1139R008
frameshift_variant
c.3073dup
p.Met1025AsnfsTer6
De novo
Simplex
GEN1139R009
missense_variant
c.4909A>T
p.Thr1637Ser
De novo
Simplex
GEN1139R010
missense_variant
c.5528C>A
p.Ser1843Tyr
De novo
Simplex
GEN1139R011
frameshift_variant
c.5549_5550del
p.Arg1850IlefsTer3
De novo
Simplex
GEN1139R012
frameshift_variant
c.1881_1882del
p.Val629AlafsTer56
De novo
Simplex
GEN1139R013
frameshift_variant
c.5753_5756delTTAG
p.Val1918GlufsTer87
De novo
Simplex
GEN1139R014
frameshift_variant
c.3852_3856del
p.Met1284IlefsTer2
De novo
Simplex
GEN1139R015
frameshift_variant
c.5753_5756del
p.Val1918GlufsTer87
De novo
Simplex
GEN1139R016
inframe_deletion
c.4999_5013del
p.Asp1667_Asn1671del
De novo
Simplex
GEN1139R017
frameshift_variant
c.5031_5032insAA
p.Asp1678LysfsTer9
De novo
Simplex
GEN1139R018
frameshift_variant
c.6002_6003insCC
p.Arg2002GlnfsTer5
De novo
Simplex
GEN1139R019
frameshift_variant
c.4358_4359del
p.Thr1453SerfsTer11
De novo
Simplex
GEN1139R020
frameshift_variant
c.4640del
p.His1547LeufsTer76
De novo
Simplex
GEN1139R021
frameshift_variant
c.6087del
p.Ser2029ArgfsTer22
De novo
Simplex
GEN1139R022
frameshift_variant
c.3597_3598dup
p.Pro1200ArgfsTer17
De novo
Simplex
GEN1139R023
inframe_deletion
c.4151_4174del
p.Leu1384_Val1391del
Unknown
Simplex
GEN1139R024
frameshift_variant
c.2365del
p.Ser789AlafsTer8
De novo
Simplex
GEN1139R025
stop_gained
c.3334C>T
p.Arg1112Ter
De novo
Simplex
GEN1139R026
frameshift_variant
c.268del
p.Ser90ValfsTer59
De novo
Simplex
GEN1139R027
frameshift_variant
c.4055del
p.Pro1352GlnfsTer14
De novo
Simplex
GEN1139R028
frameshift_variant
c.4549dup
p.Glu1517GlyfsTer6
De novo
Simplex
GEN1139R029
frameshift_variant
c.5753_5756del
p.Val1918GlufsTer87
De novo
Simplex
GEN1139R030
frameshift_variant
c.5753_5756del
p.Val1918GlufsTer87
De novo
Simplex
GEN1139R031
copy_number_loss
De novo
Simplex
GEN1139R032
stop_gained
c.1183C>T
p.Gln395Ter
De novo
Simplex
GEN1139R033
frameshift_variant
c.3963del
p.Ala1322ProfsTer13
De novo
Simplex
GEN1139R034
frameshift_variant
c.4865_4869del
p.Leu1622Ter
De novo
Simplex
GEN1139R035
frameshift_variant
c.5753_5756del
p.Val1918GlufsTer87
Unknown
Unknown
GEN1139R036
frameshift_variant
c.5753_5756del
p.Val1918GlufsTer87
De novo
GEN1139R037
frameshift_variant
c.326_329del
p.Lys109SerfsTer39
De novo
GEN1139R038
frameshift_variant
c.3135_3157del
p.Glu1046GlyfsTer2
De novo
GEN1139R039
stop_gained
c.3408C>A
p.Tyr1136Ter
Unknown
GEN1139R040
frameshift_variant
c.5753_5756del
p.Val1918GlufsTer87
Unknown
GEN1139R041
stop_gained
c.5761C>T
p.Arg1921Ter
Unknown
GEN1139R042
frameshift_variant
c.6461del
p.Asn2154IlefsTer2
De novo
GEN1139R043
frameshift_variant
c.4779_4782del
p.Ser1594LeufsTer28
De novo
GEN1139R044
frameshift_variant
c.5753_5756del
p.Val1918GlufsTer87
De novo
GEN1139R045
missense_variant
c.3214C>T
p.Arg1072Cys
Unknown
GEN1139R046
stop_gained
c.2763C>A
p.Tyr921Ter
De novo
GEN1139R047
frameshift_variant
c.4777_4778del
p.Leu1593IlefsTer11
De novo
GEN1139R048
frameshift_variant
c.4448_4452del
p.Val1483GlufsTer4
Unknown
GEN1139R049
frameshift_variant
c.2160del
p.Met721TrpfsTer6
De novo
GEN1139R050
frameshift_variant
c.4663del
p.Thr1555LeufsTer68
De novo
GEN1139R051
frameshift_variant
c.5753_5756del
p.Val1918GlufsTer87
De novo
GEN1139R052
frameshift_variant
c.5753_5756del
p.Val1918GlufsTer87
De novo
GEN1139R053
frameshift_variant
c.4678del
p.Glu1560LysfsTer63
Unknown
GEN1139R054
stop_gained
c.394C>T
p.Gln132Ter
De novo
GEN1139R055
frameshift_variant
c.1444del
p.Leu482CysfsTer4
De novo
GEN1139R056
frameshift_variant
c.5230del
p.Arg1744ValfsTer29
De novo
GEN1139R057
frameshift_variant
c.5753_5756del
p.Val1918GlufsTer87
Unknown
GEN1139R058
frameshift_variant
c.5753_5756del
p.Val1918GlufsTer87
Unknown
GEN1139R059
frameshift_variant
c.5753_5756del
p.Val1918GlufsTer87
Unknown
GEN1139R060
stop_gained
c.3203C>G
p.Ser1068Ter
Unknown
GEN1139R061
frameshift_variant
c.457del
p.Asp153IlefsTer4
Unknown
GEN1139R062
frameshift_variant
c.384del
p.Lys128AsnfsTer21
Unknown
GEN1139R063
copy_number_loss
Unknown
GEN1139R064
frameshift_variant
c.6010del
p.Val2004TrpfsTer2
Unknown
GEN1139R065
frameshift_variant
c.3711del
p.Ser1238GlnfsTer3
Unknown
GEN1139R066
frameshift_variant
c.6010del
p.Val2004TrpfsTer2
Unknown
GEN1139R067
frameshift_variant
c.5753_5756del
p.Val1918GlufsTer87
Unknown
GEN1139R068
frameshift_variant
c.348_351del
p.Asn116LysfsTer32
Unknown
GEN1139R069
frameshift_variant
c.5753_5756del
p.Val1918GlufsTer87
Unknown
GEN1139R070
frameshift_variant
c.5753_5756del
p.Val1918GlufsTer87
Unknown
GEN1139R071
missense_variant
c.668C>T
p.Ser223Leu
Unknown
GEN1139R072
stop_gained
c.3334C>T
p.Arg1112Ter
Unknown
GEN1139R073
frameshift_variant
c.1881_1882del
p.Val629AlafsTer56
Unknown
GEN1139R074
missense_variant
c.1736C>G
p.Thr579Ser
Unknown
GEN1139R075
missense_variant
c.1085C>T
p.Pro362Leu
Unknown
GEN1139R076
frameshift_variant
c.4641_4642del
p.His1547GlnfsTer9
De novo
Simplex
GEN1139R077
missense_variant
c.2051A>G
p.Tyr684Cys
De novo
GEN1139R078
missense_variant
c.3191G>A
p.Arg1064His
De novo
GEN1139R079
synonymous_variant
c.4779A>G
p.Leu1593%3D
De novo
GEN1139R080
frameshift_variant
c.5753_5756del
p.Val1918GlufsTer87
De novo
GEN1139R081
frameshift_variant
c.2910del
p.Tyr970Ter
De novo
GEN1139R082
missense_variant
c.2080A>G
p.Thr694Ala
Familial
Multiplex
GEN1139R083
missense_variant
c.6925G>A
p.Gly2309Arg
De novo
Simplex
GEN1139R084
frameshift_variant
c.3156del
p.Met1053TrpfsTer6
De novo
GEN1139R085
stop_gained
c.5743C>T
p.Arg1915Ter
De novo
Simplex
No Common Variants Available
21
Deletion-Duplication
13
21
Deletion-Duplication
1
No Animal Model Data Available
No Interactions Available