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Relevance to Autism

A deletion containing part of the SNTG2 gene was identified in a patient with autistic features that was inherited from a mother with a mild personality disorder and was absent in a normal brother (Rosenfeld et al., 2010). In a subsequent study, a translocation disrupting the SNTG2 gene was identified in a female proband diagnosed with autism (Talkowski et al., 2012).

Molecular Function

his gene encodes a protein belonging to the syntrophin family. Syntrophins are cytoplasmic peripheral membrane proteins that bind to components of mechanosenstive sodium channels and the extreme carboxy-terminal domain of dystrophin and dystrophin-related proteins. The PDZ domain of this protein product interacts with a protein component of a mechanosensitive sodium channel that affects channel gating. Absence or reduction of this protein product has been associated with Duchenne muscular dystrophy.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Copy number variations associated with autism spectrum disorders contribute to a spectrum of neurodevelopmental disorders.
ASD
Support
Identification of rare copy number variants in high burden schizophrenia families.
SCZ
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Exome sequencing in multiplex autism families suggests a major role for heterozygous truncating mutations.
ASD
Highly Cited
Neuroligins 3 and 4X interact with syntrophin-gamma2, and the interactions are affected by autism-related mutations.
Recent Recommendation
Sequencing chromosomal abnormalities reveals neurodevelopmental loci that confer risk across diagnostic boundaries.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN360R001 
 copy_number_loss 
  
  
 Familial 
 Maternal 
 Simplex 
 GEN360R002 
 translocation 
  
  
 Unknown 
  
  
 GEN360R003 
 copy_number_gain 
  
  
 Familial 
 Paternal 
 Multiplex 
 GEN360R004 
 missense_variant 
 c.1115T>C 
 p.Leu372Ser 
 Familial 
 Maternal 
 Multiplex 
 GEN360R005 
 stop_gained 
 c.1273C>T 
 p.Gln425Ter 
 Familial 
 Paternal 
 Multiplex 
 GEN360R006 
 frameshift_variant 
 c.435_442del 
 p.Asp146TyrfsTer5 
 Familial 
 Maternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
2
Deletion-Duplication
 45
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 1
 
2
Duplication
 3
 
2
Duplication
 4
 

No Animal Model Data Available


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
CTNNAL1 catenin (cadherin-associated protein), alpha-like 1 8727 Q9UBT7 IP; LC-MS/MS
Huttlin EL , et al. 2015
DMD dystrophin 1756 P11532 Y2H; GST
Piluso G , et al. 2000
DMD dystrophin 1756 P11532 IP; LC-MS/MS
Huttlin EL , et al. 2015
DTNA dystrobrevin, alpha 1837 Q9Y4J8 Y2H; GST
Piluso G , et al. 2000
DTNA dystrobrevin, alpha 1837 Q9Y4J8 IP; LC-MS/MS
Huttlin EL , et al. 2015
DTNB dystrobrevin, beta 1838 B7Z6A9 Y2H; GST
Piluso G , et al. 2000
DTNB dystrobrevin, beta 1838 B7Z6A9 IP; LC-MS/MS
Huttlin EL , et al. 2015
EPSTI1 Epithelial-stromal interaction protein 1 94240 Q96J88-2 IP; LC-MS/MS
Huttlin EL , et al. 2015
FMR1 fragile X mental retardation 1 2332 G8JLE9 PAR-CLIP
Ascano M Jr , et al. 2012
MPP3 membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3) 4356 Q13368 Y2H; bimolecular fluorescence complementation assay
Rolland T , et al. 2014
NLGN3 neuroligin 3 54413 D3DVV1 IP; Bimolecular fluorescence complementation assay; IP/WB; Y2H
Yamakawa H , et al. 2007
NLGN4X neuroligin 4, X-linked 57502 Q8N0W4 IP; Bimolecular fluorescence complementation assay; IP/WB; Y2H
Yamakawa H , et al. 2007
RNF31 ring finger protein 31 55072 Q96EP0 IP; LC-MS/MS
Huttlin EL , et al. 2015
SCN5A sodium channel, voltage-gated, type V, alpha subunit 6331 Q14524 Y2H; GST
Ou Y , et al. 2002
SNTA1 syntrophin, alpha 1 6640 Q13424 IP; LC-MS/MS
Huttlin EL , et al. 2015
SNTB1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) 6641 Q13884 IP; LC-MS/MS
Huttlin EL , et al. 2015
SNTB2 syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2) 6645 Q13425 IP; LC-MS/MS
Huttlin EL , et al. 2015
UTRN utrophin 7402 P46939 IP; LC-MS/MS
Huttlin EL , et al. 2015

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