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Relevance to Autism

Transmission And De Novo Association (TADA) analysis of whole-genome sequencing data from a cohort of 4,551 individuals in 1,004 multiplex families having two or more autistic children identified SNCAIP as a novel ASD risk gene with a false discovery rate (FDR) less than 0.1. De novo missense variants in this gene have also been identified in three ASD probands (De Rubeis et al., 2014; Zhou et al., 2022).

Molecular Function

This gene encodes a protein containing several protein-protein interaction domains, including ankyrin-like repeats, a coiled-coil domain, and an ATP/GTP-binding motif. The encoded protein interacts with alpha-synuclein in neuronal tissue and may play a role in the formation of cytoplasmic inclusions and neurodegeneration. A mutation in this gene has been associated with Parkinson's disease.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Support
Integrating de novo and inherited variants in 42
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1414R001 
 frameshift_variant 
 c.2149_2153dup 
 p.Met718IlefsTer2 
 Familial 
 Paternal 
 Extended multiplex 
 GEN1414R002 
 frameshift_variant 
 c.2830dup 
 p.Leu944ProfsTer16 
 De novo 
  
 Multiplex 
 GEN1414R003 
 missense_variant 
 c.2579C>T 
 p.Pro860Leu 
 De novo 
  
  
 GEN1414R004 
 missense_variant 
 c.847A>T 
 p.Thr283Ser 
 De novo 
  
  
 GEN1414R005 
 missense_variant 
 c.2200G>T 
 p.Asp734Tyr 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
5
Duplication
 1
 
5
Deletion
 1
 
5
Deletion
 1
 
5
Duplication
 3
 
5
Deletion
 1
 
5
Deletion-Duplication
 10
 

No Animal Model Data Available

 

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