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Relevance to Autism

SNAP25+/- mice exhibit hyperactivity, cognitive and social impairment (Braida et al., 2015). In this same report, a SNP encompassing a regulatory element of SNAP25 (rs363050) was shown to associate with both CARS scores (p=0.005) and cognitive scores (p=0.003) in an ASD cohort, while a SNP within intron 1 of the SNAP25 gene (rs363043) had previously been shown to associate with both increasing CARS (p=0.001) and hyperactivity scores (p=0.006) in a separate ASD cohort (Guerini et al., 2011). Heterozygous variants in SNAP25 are responsible for developmental and epileptic encephalopathy 117 (DEE117; OMIM 616330). Klockner et al., 2020 described a cohort of 23 individuals with de novo pathogenic or likely pathogenic variants in SNAP25 presenting with developmental delay, intellectual disability, and seizures; while most individuals were not reported to present with behavioral issues, three individuals showed signs of autism spectrum disorder (3/18, 17%), and four individuals presented with stereotypical hand movements (4/18, 22%).

Molecular Function

This gene encodes a t-SNARE involved in the molecular regulation of neurotransmitter release that associates with proteins involved in vesicle docking and membrane fusion and may play an important role in the synaptic function of specific neuronal systems. Polymorphisms in this gene have been shown to associate with ADHD.

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References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Association between SNAP-25 gene polymorphisms and cognition in autism: functional consequences and potential therapeutic strategies.
ASD
Positive Association
SNAP-25 single nucleotide polymorphisms are associated with hyperactivity in autism spectrum disorders.
ASD
Positive Association
Family-based association study identifies SNAP25 as a susceptibility gene for autism in the Han Chinese population
ASD
Positive Association
Synaptosome-Associated Protein 25 (SNAP25) Gene Association Analysis Revealed Risk Variants for ASD, in Iranian Population.
ASD
Support
Analysis of recent shared ancestry in a familial cohort identifies coding and noncoding autism spectrum disorder variants
ASD
Support
De novo variants in SNAP25 cause an early-onset developmental and epileptic encephalopathy
Developmental and epileptic encephalopathy 117, DD
Autistic features, stereotypy
Support
Clinical Application of a Customized Gene Panel for Identifying Autism Spectrum Disorder-Associated Variants
ASD
ID
Support
High Rate of Recurrent De Novo Mutations in Developmental and Epileptic Encephalopathies.
Epilepsy/seizures
DD, ID
Support
SNAP25 variant I67N: synaptic phenotypes, drug response and proteome changes in human neurons
Developmental and epileptic encephalopathy 117
Support
Candidate-gene criteria for clinical reporting: diagnostic exome sequencing identifies altered candidate genes among 8% of patients with undiagnose...
Neurodevelopment disorder
Support
SNAP25 disease mutations change the energy landscape for synaptic exocytosis due to aberrant SNARE interactions
Developmental and epileptic encephalopathy 117
Support
Epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
Reduced SNAP-25 increases PSD-95 mobility and impairs spine morphogenesis.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN701R001 
 missense_variant 
 c.142G>T 
 p.Val48Phe 
 De novo 
  
  
 GEN701R002 
 missense_variant 
 c.496G>T 
 p.Asp166Tyr 
 De novo 
  
 Simplex 
 GEN701R003a 
 intergenic_variant 
  
  
 Familial 
 Both parents 
 Simplex 
 GEN701R004 
 synonymous_variant 
 c.513C>T 
 p.Ile171= 
 De novo 
  
 Multiplex 
 GEN701R005 
 missense_variant 
 c.170T>G 
 p.Leu57Arg 
 Unknown 
  
 Simplex 
 GEN701R006 
 missense_variant 
 c.118A>G 
 p.Lys40Glu 
 De novo 
  
 Simplex 
 GEN701R007 
 missense_variant 
 c.127G>C 
 p.Gly43Arg 
 De novo 
  
 Simplex 
 GEN701R008 
 missense_variant 
 c.127G>C 
 p.Gly43Arg 
 De novo 
  
 Simplex 
 GEN701R009 
 missense_variant 
 c.127G>C 
 p.Gly43Arg 
 De novo 
  
 Simplex 
 GEN701R010 
 missense_variant 
 c.142G>T 
 p.Val48Phe 
 De novo 
  
 Simplex 
 GEN701R011 
 missense_variant 
 c.149T>C 
 p.Leu50Ser 
 De novo 
  
 Simplex 
 GEN701R012 
 missense_variant 
 c.170T>G 
 p.Leu57Arg 
 De novo 
  
 Simplex 
 GEN701R013 
 missense_variant 
 c.197A>C 
 p.Gln66Pro 
 De novo 
  
 Simplex 
 GEN701R014 
 missense_variant 
 c.200T>A 
 p.Ile67Asn 
 De novo 
  
 Simplex 
 GEN701R015 
 missense_variant 
 c.212T>C 
 p.Met71Thr 
 De novo 
  
 Simplex 
 GEN701R016 
 missense_variant 
 c.212T>C 
 p.Met71Thr 
 De novo 
  
 Simplex 
 GEN701R017 
 missense_variant 
 c.497A>G 
 p.Asp166Gly 
 De novo 
  
 Simplex 
 GEN701R018 
 missense_variant 
 c.521A>C 
 p.Gln174Pro 
 De novo 
  
 Simplex 
 GEN701R019 
 missense_variant 
 c.575T>C 
 p.Ile192Thr 
 De novo 
  
 Simplex 
 GEN701R020 
 missense_variant 
 c.593C>G 
 p.Arg198Pro 
 De novo 
  
 Simplex 
 GEN701R021 
 missense_variant 
 c.596C>G 
 p.Ala199Gly 
 De novo 
  
 Simplex 
 GEN701R022 
 missense_variant 
 c.596C>T 
 p.Ala199Val 
 De novo 
  
 Simplex 
 GEN701R023 
 splice_site_variant 
 c.72+1G>A 
 p.? 
 De novo 
  
 Simplex 
 GEN701R024 
 splice_site_variant 
 c.114+2T>G 
 p.? 
 De novo 
  
 Simplex 
 GEN701R025 
 stop_gained 
 c.520C>T 
 p.Gln174Ter 
 De novo 
  
 Simplex 
 GEN701R026 
 stop_gained 
 c.520C>T 
 p.Gln174Ter 
 De novo 
  
 Simplex 
 GEN701R027 
 stop_gained 
 c.589C>T 
 p.Gln197Ter 
 De novo 
  
 Simplex 
 GEN701R028 
 missense_variant 
 c.238G>T 
 p.Asp80Tyr 
 Familial 
 Maternal 
  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN701C001 
 intron_variant 
 rs363050 
 c.-63-21820G>A;c.-370-21820G>A 
 A/G 
 46 Italian children with ASD 
 Discovery 
 GEN701C002 
 intron_variant 
 rs363043 
 c.-64+26521C>T;c.-64+26285C>T;c.-64+18060C>T;c.-371+26521C>T 
  
 67 Italian children with ASD 
 Discovery 
 GEN701C003 
 3_prime_UTR_variant 
 rs3746544 
 c.*239G>T 
  
 524 Iranian ASD patients and 472 age-, gender-, and ethnically-matched healthy controls 
 Discovery 
 GEN701C004 
 intron_variant 
 rs363018 
 c.-63-19846A>G 
  
 640 Han Chinese autism trios 
 Discovery 
 GEN701C005 
 3_prime_UTR_variant 
 rs8636 
 c.*897T>C 
  
 641 Han Chinese autism trios 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
20
Duplication
 1
 
20
Duplication
 4
 
20
Duplication
 1
 
20
Duplication
 1
 
20
Duplication
 1
 
20
Duplication
 3
 

No Animal Model Data Available



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