Summary Statistics:
ASD Reports: 14
Recent Reports: 1
Annotated variants: 33
Associated CNVs: 6
Evidence score: 0
Gene Score: 4
Relevance to Autism
SNAP25+/- mice exhibit hyperactivity, cognitive and social impairment (Braida et al., 2015). In this same report, a SNP encompassing a regulatory element of SNAP25 (rs363050) was shown to associate with both CARS scores (p=0.005) and cognitive scores (p=0.003) in an ASD cohort, while a SNP within intron 1 of the SNAP25 gene (rs363043) had previously been shown to associate with both increasing CARS (p=0.001) and hyperactivity scores (p=0.006) in a separate ASD cohort (Guerini et al., 2011). Heterozygous variants in SNAP25 are responsible for developmental and epileptic encephalopathy 117 (DEE117; OMIM 616330). Klockner et al., 2020 described a cohort of 23 individuals with de novo pathogenic or likely pathogenic variants in SNAP25 presenting with developmental delay, intellectual disability, and seizures; while most individuals were not reported to present with behavioral issues, three individuals showed signs of autism spectrum disorder (3/18, 17%), and four individuals presented with stereotypical hand movements (4/18, 22%).
Molecular Function
This gene encodes a t-SNARE involved in the molecular regulation of neurotransmitter release that associates with proteins involved in vesicle docking and membrane fusion and may play an important role in the synaptic function of specific neuronal systems. Polymorphisms in this gene have been shown to associate with ADHD.
References
Primary
Association between SNAP-25 gene polymorphisms and cognition in autism: functional consequences and potential therapeutic strategies.
ASD
Positive Association
SNAP-25 single nucleotide polymorphisms are associated with hyperactivity in autism spectrum disorders.
ASD
Positive Association
Family-based association study identifies SNAP25 as a susceptibility gene for autism in the Han Chinese population
ASD
Positive Association
Synaptosome-Associated Protein 25 (SNAP25) Gene Association Analysis Revealed Risk Variants for ASD, in Iranian Population.
ASD
Support
Analysis of recent shared ancestry in a familial cohort identifies coding and noncoding autism spectrum disorder variants
ASD
Support
De novo variants in SNAP25 cause an early-onset developmental and epileptic encephalopathy
Developmental and epileptic encephalopathy 117, DD
Autistic features, stereotypy
Support
Clinical Application of a Customized Gene Panel for Identifying Autism Spectrum Disorder-Associated Variants
ASD
ID
Support
High Rate of Recurrent De Novo Mutations in Developmental and Epileptic Encephalopathies.
Epilepsy/seizures
DD, ID
Support
SNAP25 variant I67N: synaptic phenotypes, drug response and proteome changes in human neurons
Developmental and epileptic encephalopathy 117
Support
Candidate-gene criteria for clinical reporting: diagnostic exome sequencing identifies altered candidate genes among 8% of patients with undiagnose...
Neurodevelopment disorder
Support
SNAP25 disease mutations change the energy landscape for synaptic exocytosis due to aberrant SNARE interactions
Developmental and epileptic encephalopathy 117
Support
Epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
Reduced SNAP-25 increases PSD-95 mobility and impairs spine morphogenesis.
GEN701R001
missense_variant
c.142G>T
p.Val48Phe
De novo
GEN701R002
missense_variant
c.496G>T
p.Asp166Tyr
De novo
Simplex
GEN701R003a
intergenic_variant
Familial
Both parents
Simplex
GEN701R004
synonymous_variant
c.513C>T
p.Ile171=
De novo
Multiplex
GEN701R005
missense_variant
c.170T>G
p.Leu57Arg
Unknown
Simplex
GEN701R006
missense_variant
c.118A>G
p.Lys40Glu
De novo
Simplex
GEN701R007
missense_variant
c.127G>C
p.Gly43Arg
De novo
Simplex
GEN701R008
missense_variant
c.127G>C
p.Gly43Arg
De novo
Simplex
GEN701R009
missense_variant
c.127G>C
p.Gly43Arg
De novo
Simplex
GEN701R010
missense_variant
c.142G>T
p.Val48Phe
De novo
Simplex
GEN701R011
missense_variant
c.149T>C
p.Leu50Ser
De novo
Simplex
GEN701R012
missense_variant
c.170T>G
p.Leu57Arg
De novo
Simplex
GEN701R013
missense_variant
c.197A>C
p.Gln66Pro
De novo
Simplex
GEN701R014
missense_variant
c.200T>A
p.Ile67Asn
De novo
Simplex
GEN701R015
missense_variant
c.212T>C
p.Met71Thr
De novo
Simplex
GEN701R016
missense_variant
c.212T>C
p.Met71Thr
De novo
Simplex
GEN701R017
missense_variant
c.497A>G
p.Asp166Gly
De novo
Simplex
GEN701R018
missense_variant
c.521A>C
p.Gln174Pro
De novo
Simplex
GEN701R019
missense_variant
c.575T>C
p.Ile192Thr
De novo
Simplex
GEN701R020
missense_variant
c.593C>G
p.Arg198Pro
De novo
Simplex
GEN701R021
missense_variant
c.596C>G
p.Ala199Gly
De novo
Simplex
GEN701R022
missense_variant
c.596C>T
p.Ala199Val
De novo
Simplex
GEN701R023
splice_site_variant
c.72+1G>A
p.?
De novo
Simplex
GEN701R024
splice_site_variant
c.114+2T>G
p.?
De novo
Simplex
GEN701R025
stop_gained
c.520C>T
p.Gln174Ter
De novo
Simplex
GEN701R026
stop_gained
c.520C>T
p.Gln174Ter
De novo
Simplex
GEN701R027
stop_gained
c.589C>T
p.Gln197Ter
De novo
Simplex
GEN701R028
missense_variant
c.238G>T
p.Asp80Tyr
Familial
Maternal
GEN701C001
intron_variant
rs363050
c.-63-21820G>A;c.-370-21820G>A
A/G
46 Italian children with ASD
Discovery
GEN701C002
intron_variant
rs363043
c.-64+26521C>T;c.-64+26285C>T;c.-64+18060C>T;c.-371+26521C>T
67 Italian children with ASD
Discovery
GEN701C003
3_prime_UTR_variant
rs3746544
c.*239G>T
524 Iranian ASD patients and 472 age-, gender-, and ethnically-matched healthy controls
Discovery
GEN701C004
intron_variant
rs363018
c.-63-19846A>G
640 Han Chinese autism trios
Discovery
GEN701C005
3_prime_UTR_variant
rs8636
c.*897T>C
641 Han Chinese autism trios
Discovery
No Animal Model Data Available
Summary Statistics:
Total Interactions: 15
Total Publications: 8
Show all nodes
Hide non-ASD
Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
C14ORF104
Protein kintoun
55172
Q9NVR5-2
IP; LC-MS/MS
Huttlin EL , et al. 2015
CHD8
chromodomain helicase DNA binding protein 8
57680
Q9HCK8
CHIP-seq
Cotney J , et al. 2015
DGUOK
deoxyguanosine kinase
1716
E5KSL5
IP; LC-MS/MS
Huttlin EL , et al. 2015
NUFIP1
Nuclear FMRP Interacting Protein 1
26747
Q9UHK0
IP; LC-MS/MS
Huttlin EL , et al. 2015
GRIP1
glutamate receptor interacting protein 1
74053
Q925T6
IP/WB; GST
Selak S , et al. 2009
Snap47
synaptosomal-associated protein, 47
67826
Q8R570
IP/WB
Shimojo M , et al. 2015
Stx1a
syntaxin 1A (brain)
20907
O35526
IP/WB
Shimojo M , et al. 2015
SYT3
synaptotagmin III
20981
G3X9Y1
GST; IP/WB
Gerona RR , et al. 2000
Vamp2
vesicle-associated membrane protein 2
22318
P63044
IP/WB
Shimojo M , et al. 2015
APP
amyloid beta (A4) precursor protein
351
P05067
in vitro binding assay
Yang Y , et al. 2015
Stx1a
syntaxin 1A (brain)
116470
P32851
in vitro binding assay; ITC; Fluorescence anisotropy
Zhang Y , et al. 2015
Stxbp1
syntaxin binding protein 1
25558
P61765
in vitro binding assay
Zhang Y , et al. 2015
Vamp2
vesicle-associated membrane protein 2
24803
P63045
ITC; Fluorescence anisotropy
Zhang Y , et al. 2015
Zdhhc13
zinc finger, DHHC domain containing 13
243983
Q9CWU2
Y2H; IP/WB
Lemonidis K , et al. 2015
Zdhhc17
zinc finger, DHHC domain containing 17
320150
Q80TN5
Y2H; IP/WB; in vitro binding assay
Lemonidis K , et al. 2015