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Relevance to Autism

SMARCC1 was identified as an ASD candidate gene in Wilfert et al., 2021 based on the discovery of private likely gene-disruptive (LGD) variants in this highly constrained (pLI 0.99) gene that were exclusively transmitted to three ASD probands in three independent families and its interconnectedness with other ASD candidate genes in protein-protein interaction (PPI) networks in this report. De novo missense variants in this gene had previously been identified in two ASD probands from the Autism Sequencing Consortium (De Rubeis et al., 2014; Satterstrom et al., 2020).

Molecular Function

The protein encoded by this gene is a member of the SWI/SNF family of proteins, whose members display helicase and ATPase activities and which are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI and contains a predicted leucine zipper motif typical of many transcription factors.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Recent ultra-rare inherited variants implicate new autism candidate risk genes
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1282R001 
 stop_gained 
 c.2734C>T 
 p.Arg912Ter 
 Familial 
  
 Simplex 
 GEN1282R002 
 frameshift_variant 
 c.2914del 
 p.Gln972SerfsTer19 
 Familial 
  
 Simplex 
 GEN1282R003 
 stop_gained 
 c.2866C>T 
 p.Gln956Ter 
 Familial 
  
 Simplex 
 GEN1282R004 
 missense_variant 
 c.2225A>G 
 p.Gln742Arg 
 De novo 
  
  
 GEN1282R005 
 missense_variant 
 c.1727T>G 
 p.Val576Gly 
 De novo 
  
  
 GEN1282R006 
 missense_variant 
 c.2912A>G 
 p.His971Arg 
 De novo 
  
  
 GEN1282R007 
 synonymous_variant 
 c.2631G>A 
 p.Ala877%3D 
 De novo 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
3
Deletion-Duplication
 17
 
3
Deletion
 13
 

No Animal Model Data Available

 

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