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Relevance to Autism

A recurrent damaging missense variant at p.Ile500 of the SMAD4 gene was originally identified in an ASD proband from the Simons Simplex Collection (Iossifov et al., 2014) and a female proband with developmental delay (Deciphering Developmental Disorders Study, 2015). Geisheker et al., 2017 identified two novel ASD probands with a de novo damaging missense variant at p.Ile500, bringing the total number of de novo damaging missense variants at this position observed in NDD cases to 4 (P=2.07E-06, one-tailed binomial test, genome-wide correction); in contrast, no similar variants at p.Ile500 were observed in ExAC (allele count 0/45,376).

Molecular Function

This gene encodes a member of the Smad family of signal transduction proteins. Smad proteins are phosphorylated and activated by transmembrane serine-threonine receptor kinases in response to TGF-beta signaling. The product of this gene forms homomeric complexes and heteromeric complexes with other activated Smad proteins, which then accumulate in the nucleus and regulate the transcription of target genes. This protein binds to DNA and recognizes an 8-bp palindromic sequence (GTCTAGAC) called the Smad-binding element (SBE). The Smad proteins are subject to complex regulation by post-translational modifications.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
De Novo Damaging DNA Coding Mutations Are Associated With Obsessive-Compulsive Disorder and Overlap With Tourette's Disorder and Autism.
OCD
Support
Large-scale discovery of novel genetic causes of developmental disorders.
DD
Support
DD
Support
Myhre syndrome
Support
Integrating de novo and inherited variants in 42
ASD
Support
A single center experience with publicly funded clinical exome sequencing for neurodevelopmental disorders or multiple congenital anomalies
ADHD, DD, ID
Support
Exploring the biological role of postzygotic and germinal de novo mutations in ASD
ASD
Recent Recommendation
Hotspots of missense mutation identify neurodevelopmental disorder genes and functional domains.
ASD
Recent Recommendation
Recent Recommendation
An interactome perturbation framework prioritizes damaging missense mutations for developmental disorders.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN916R001 
 missense_variant 
 c.1498A>G 
 p.Ile500Val 
 De novo 
  
 Simplex 
 GEN916R002 
 missense_variant 
 c.1498A>G 
 p.Ile500Val 
 De novo 
  
 Simplex 
 GEN916R003 
 missense_variant 
 c.1498A>G 
 p.Ile500Val 
 De novo 
  
  
 GEN916R004 
 missense_variant 
 c.1499T>C 
 p.Ile500Thr 
 De novo 
  
  
 GEN916R005 
 missense_variant 
 c.1486C>T 
 p.Arg496Cys 
 Unknown 
  
  
 GEN916R006 
 missense_variant 
 c.1449T>A 
 p.Ser483Arg 
 Unknown 
  
  
 GEN916R007 
 missense_variant 
 c.1486C>T 
 p.Arg496Cys 
 Unknown 
  
  
 GEN916R008 
 missense_variant 
 c.1486C>T 
 p.Arg496Cys 
 Unknown 
  
  
 GEN916R009 
 missense_variant 
 c.904T>C 
 p.Trp302Arg 
 De novo 
  
 Simplex 
 GEN916R010 
 missense_variant 
 c.1486C>T 
 p.Arg496Cys 
 De novo 
  
 Simplex 
 GEN916R011 
 missense_variant 
 c.1498A>G 
 p.Ile500Val 
 De novo 
  
 Simplex 
 GEN916R012 
 stop_gained 
 c.1333C>T 
 p.Arg445Ter 
 De novo 
  
  
 GEN916R013 
 missense_variant 
 c.1499T>C 
 p.Ile500Thr 
 De novo 
  
 Simplex 
  et al.  
 GEN916R014 
 missense_variant 
 c.1486C>T 
 p.Arg496Cys 
 Unknown 
  
  
  et al.  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
18
Duplication
 2
 
18
Duplication
 2
 
18
Duplication
 1
 
18
Duplication
 2
 
18
Deletion-Duplication
 14
 

No Animal Model Data Available

 

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