SLCO1B3
Homo sapiens
Gene Name: Solute carrier organic anion transporter family, member 1B3
Aliases: HBLRR, LST-2, LST-3TM13, LST3, OATP-8, OATP1B3, OATP8, SLC21A8
Chromosome No: 12
Chromosome Band: 12p12.2
Genetic Category: Rare single gene variant
Aliases: HBLRR, LST-2, LST-3TM13, LST3, OATP-8, OATP1B3, OATP8, SLC21A8
Chromosome No: 12
Chromosome Band: 12p12.2
Genetic Category: Rare single gene variant
Summary Statistics:
ASD Reports: 6
Recent Reports: 1
Annotated variants: 21
Associated CNVs: 12
Evidence score: 3
ASD Reports: 6
Recent Reports: 1
Annotated variants: 21
Associated CNVs: 12
Evidence score: 3
Associated Disorders: |
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Relevance to Autism
A de novo splice-site variant in this gene has been identified in a simplex ASD proband (De Rubeis et al., 2014). Furthermore, an inherited LoF variant in this gene was observed in both affected siblings from a quartet ASD family (Yuen et al., 2015). This gene was also included in a set of genes strongly enriched for those likely to affect risk (FDR < 0.30) (De Rubeis, et al., 2014).
Molecular Function
This gene encodes a liver-specific member of the organic anion transporter family. The encoded protein is a transmembrane receptor that mediates the sodium-independent uptake of endogenous and xenobiotic compounds and plays a critical role in bile acid and bilirubin transport. Mutations in this gene are a cause of Rotor type hyperbilirubinemia (OMIM:237450).
References
Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Phenotype-to-genotype approach reveals head-circumference-associated genes in an autism spectrum disorder cohort.
ASD
Macrocephaly
Recent Recommendation
Whole-genome sequencing of quartet families with autism spectrum disorder.
ASD
Rare
Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
GEN704R002
frameshift_variant
c.1794_1795del
p.Cys599TyrfsTer15
Familial
Maternal
Multiplex
GEN704R003
frameshift_variant
c.121_125dup
p.Asp42GlufsTer13
Familial
Maternal
Multiplex
GEN704R006
missense_variant
c.1696G>A
p.Glu566Lys
Familial
Paternal
Simplex
GEN704R007
missense_variant
c.1696G>A
p.Glu566Lys
Familial
Maternal
Simplex
GEN704R008
missense_variant
c.1615G>C
p.Ala539Pro
Familial
Maternal
Simplex
GEN704R009
missense_variant
c.1397A>G
p.Asp466Gly
Familial
Maternal
Simplex
GEN704R010
missense_variant
c.1082A>G
p.Lys361Arg
Familial
Maternal
Multiplex
GEN704R016
frameshift_variant
c.852_855del
p.Lys285HisfsTer14
Familial
Maternal
Multiplex
GEN704R017
frameshift_variant
c.508_509del
p.Met170ValfsTer27
Familial
Maternal
Simplex
Common
No Common Variants Available