HELP     Sign In
Search

Relevance to Autism

A de novo splice-site variant in this gene has been identified in a simplex ASD proband (De Rubeis et al., 2014). Furthermore, an inherited LoF variant in this gene was observed in both affected siblings from a quartet ASD family (Yuen et al., 2015). This gene was also included in a set of genes strongly enriched for those likely to affect risk (FDR < 0.30) (De Rubeis, et al., 2014).

Molecular Function

This gene encodes a liver-specific member of the organic anion transporter family. The encoded protein is a transmembrane receptor that mediates the sodium-independent uptake of endogenous and xenobiotic compounds and plays a critical role in bile acid and bilirubin transport. Mutations in this gene are a cause of Rotor type hyperbilirubinemia (OMIM:237450).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Phenotype-to-genotype approach reveals head-circumference-associated genes in an autism spectrum disorder cohort.
ASD
Macrocephaly
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Recent Recommendation
Whole-genome sequencing of quartet families with autism spectrum disorder.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN704R001 
 splice_site_variant 
 c.970+1G>A 
  
 De novo 
  
 Simplex 
 GEN704R002 
 frameshift_variant 
 c.1794_1795del 
 p.Cys599TyrfsTer15 
 Familial 
 Maternal 
 Multiplex 
 GEN704R003 
 frameshift_variant 
 c.121_125dup 
 p.Asp42GlufsTer13 
 Familial 
 Maternal 
 Multiplex 
 GEN704R004 
 missense_variant 
 c.1135+1G>A 
  
 Familial 
 Paternal 
 Simplex 
 GEN704R005 
 missense_variant 
 c.1747+1G>A 
  
 Familial 
 Maternal 
 Simplex 
 GEN704R006 
 missense_variant 
 c.1696G>A 
 p.Glu566Lys 
 Familial 
 Paternal 
 Simplex 
 GEN704R007 
 missense_variant 
 c.1696G>A 
 p.Glu566Lys 
 Familial 
 Maternal 
 Simplex 
 GEN704R008 
 missense_variant 
 c.1615G>C 
 p.Ala539Pro 
 Familial 
 Maternal 
 Simplex 
 GEN704R009 
 missense_variant 
 c.1397A>G 
 p.Asp466Gly 
 Familial 
 Maternal 
 Simplex 
 GEN704R010 
 missense_variant 
 c.1082A>G 
 p.Lys361Arg 
 Familial 
 Maternal 
 Multiplex 
 GEN704R011 
 missense_variant 
 c.1165G>A 
 p.Gly389Arg 
 Unknown 
  
 Unknown 
 GEN704R012 
 missense_variant 
 c.1252T>C 
 p.Ser418Pro 
 Unknown 
  
 Unknown 
 GEN704R013 
 missense_variant 
 c.1342G>A 
 p.Val448Met 
 Unknown 
  
 Unknown 
 GEN704R014 
 missense_variant 
 c.781G>A 
 p.Gly261Ser 
 Unknown 
  
 Unknown 
 GEN704R015 
 stop_gained 
 c.428T>A 
 p.Leu143Ter 
 Familial 
 Maternal 
 Multiplex 
 GEN704R016 
 frameshift_variant 
 c.852_855del 
 p.Lys285HisfsTer14 
 Familial 
 Maternal 
 Multiplex 
 GEN704R017 
 frameshift_variant 
 c.508_509del 
 p.Met170ValfsTer27 
 Familial 
 Maternal 
 Simplex 
 GEN704R018 
 missense_variant 
 c.1960A>G 
 p.Lys654Glu 
 De novo 
  
 Simplex 
 GEN704R019 
 synonymous_variant 
 c.1980C>T 
 p.Asp660%3D 
 De novo 
  
  
 GEN704R020 
 splice_site_variant 
 c.1413+1G>A 
  
 Familial 
 Maternal 
 Multiplex 
 GEN704R021 
 splice_site_variant 
 c.1663+1G>A 
  
 Familial 
 Maternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
12
Deletion-Duplication
 10
 
12
Deletion
 1
 
12
Deletion
 11
 
12
Deletion
 4
 
12
Deletion
 2
 
12
Duplication
 1
 
12
Deletion
 1
 
12
Deletion
 1
 
12
Duplication
 5
 
12
Deletion
 1
 
12
Duplication
 2
 
12
Duplication
 1
 

No Animal Model Data Available

No PIN Data Available
HELP
Copyright © 2017 MindSpec, Inc.