SLCO1B3
Homo sapiens
Gene Name: Solute carrier organic anion transporter family, member 1B3
Aliases: HBLRR, LST-2, LST-3TM13, LST3, OATP-8, OATP1B3, OATP8, SLC21A8
Chromosome No: 12
Chromosome Band: 12p12.2
Genetic Category: Rare single gene variant
Aliases: HBLRR, LST-2, LST-3TM13, LST3, OATP-8, OATP1B3, OATP8, SLC21A8
Chromosome No: 12
Chromosome Band: 12p12.2
Genetic Category: Rare single gene variant
Summary Statistics:
ASD Reports: 6
Recent Reports: 1
Annotated variants: 21
Associated CNVs: 12
Evidence score: 3
ASD Reports: 6
Recent Reports: 1
Annotated variants: 21
Associated CNVs: 12
Evidence score: 3
Associated Disorders: |
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Relevance to Autism
A de novo splice-site variant in this gene has been identified in a simplex ASD proband (De Rubeis et al., 2014). Furthermore, an inherited LoF variant in this gene was observed in both affected siblings from a quartet ASD family (Yuen et al., 2015). This gene was also included in a set of genes strongly enriched for those likely to affect risk (FDR < 0.30) (De Rubeis, et al., 2014).
Molecular Function
This gene encodes a liver-specific member of the organic anion transporter family. The encoded protein is a transmembrane receptor that mediates the sodium-independent uptake of endogenous and xenobiotic compounds and plays a critical role in bile acid and bilirubin transport. Mutations in this gene are a cause of Rotor type hyperbilirubinemia (OMIM:237450).
References
Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Synaptic, transcriptional and chromatin genes disrupted in autism.
ASD
Support
Phenotype-to-genotype approach reveals head-circumference-associated genes in an autism spectrum disorder cohort.
ASD
Macrocephaly
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Recent Recommendation
Whole-genome sequencing of quartet families with autism spectrum disorder.
ASD
Rare
Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
GEN704R002
frameshift_variant
c.1794_1795del
p.Cys599TyrfsTer15
Familial
Maternal
Multiplex
GEN704R003
frameshift_variant
c.121_125dup
p.Asp42GlufsTer13
Familial
Maternal
Multiplex
GEN704R006
missense_variant
c.1696G>A
p.Glu566Lys
Familial
Paternal
Simplex
GEN704R007
missense_variant
c.1696G>A
p.Glu566Lys
Familial
Maternal
Simplex
GEN704R008
missense_variant
c.1615G>C
p.Ala539Pro
Familial
Maternal
Simplex
GEN704R009
missense_variant
c.1397A>G
p.Asp466Gly
Familial
Maternal
Simplex
GEN704R010
missense_variant
c.1082A>G
p.Lys361Arg
Familial
Maternal
Multiplex
GEN704R016
frameshift_variant
c.852_855del
p.Lys285HisfsTer14
Familial
Maternal
Multiplex
GEN704R017
frameshift_variant
c.508_509del
p.Met170ValfsTer27
Familial
Maternal
Simplex
Common
No Common Variants Available