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Relevance to Autism

Functional characterization of a de novo missense variant in the SLC6A3 gene originally identified in a simplex ASD case as part of a whole-exome sequencing study in 175 ASD parent-child trios (originally described by Neale et al. in a 2012 Nature report) showed that this variant (T356M) resulted in anomalous dopamine transporter function and hyperactivity when expressed in the DA neurons of Drosophila (Hamilton et al., 2013). A missense variant in this same gene (p.Ala559Val), previously identified in individuals with ADHD (Mazei-Robison et al., 2005) and bipolar disorder (Grunhage et al., 2000), was recently identified in two unrelated male ASD probands and shown to alter dopamine function and trafficking (Bowton et al., 2014).

Molecular Function

This gene encodes an amine transporter that terminates the action of dopamine by its high affinity sodium-dependent reuptake into presynaptic terminals. Mutations in this gene are associated with Parkinsonism-dystonia infantile (PKDYS) [MIM:613135], while variation in the number of 40 bp tandem repeats in the 3'UTR of this gene is associated with idiopathic epilepsy, attention-deficit hyperactivity disorder, dependence on alcohol and cocaine, susceptibility to Parkinson disease and protection against nicotine dependence.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
De novo mutation in the dopamine transporter gene associates dopamine dysfunction with autism spectrum disorder.
ASD
Positive Association
Confirmation of association between attention deficit hyperactivity disorder and a dopamine transporter polymorphism.
ADHD
Positive Association
Variation of the genes encoding the human glutamate EAAT2, serotonin and dopamine transporters and Susceptibility to idiopathic generalized epilepsy.
Epilepsy
Support
Systematic screening for DNA sequence variation in the coding region of the human dopamine transporter gene (DAT1).
BPD
Support
Structural, functional, and behavioral insights of dopamine dysfunction revealed by a deletion in SLC6A3.
ASD
Support
Rare autism-associated variants implicate syntaxin 1 (STX1 R26Q) phosphorylation and the dopamine transporter (hDAT R51W) in dopamine neurotransmis...
ASD
Support
Missense dopamine transporter mutations associate with adult parkinsonism and ADHD.
ADHD, early-onset parkinsonism
Support
Attention deficit/hyperactivity disorder-derived coding variation in the dopamine transporter disrupts microdomain targeting and trafficking regula...
ADHD
Support
Anomalous dopamine release associated with a human dopamine transporter coding variant.
Support
Sequence variation in the human dopamine transporter gene in children with attention deficit hyperactivity disorder.
ADHD
Support
SLC gene mutations and pediatric neurological disorders: diverse clinical phenotypes in a Saudi Arabian population
DD
Highly Cited
Association of attention-deficit disorder and the dopamine transporter gene.
ADHD
Recent Recommendation
Autism-linked dopamine transporter mutation alters striatal dopamine neurotransmission and dopamine-dependent behaviors.
ASD
Recent Recommendation
Neuropsychiatric disease-associated genetic variants of the dopamine transporter display heterogeneous molecular phenotypes.
Recent Recommendation
The rare DAT coding variant Val559 perturbs DA neuron function, changes behavior, and alters in vivo responses to psychostimulants.
Recent Recommendation
SLC6A3 coding variant Ala559Val found in two autism probands alters dopamine transporter function and trafficking.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN568R001 
 missense_variant 
 c.1067C>T 
 p.Thr356Met 
 De novo 
  
 Simplex 
 GEN568R002 
 missense_variant 
 c.1676C>T 
 p.Ala559Val 
 Familial 
 Maternal 
 Simplex 
 GEN568R003 
 missense_variant 
 c.1676C>T 
 p.Ala559Val 
 Familial 
 Maternal 
 Multiplex 
 GEN568R004 
 missense_variant 
 c.*163A>G 
  
 Familial 
 Maternal 
 Simplex 
 GEN568R005 
 missense_variant 
 c.1676C>T 
 p.Ala559Val 
 Unknown 
 Not maternal 
 Multi-generational 
 GEN568R006 
 missense_variant 
 c.1805A>G 
 p.Glu602Gly 
 Familial 
 Paternal 
 Simplex 
 GEN568R007 
 missense_variant 
 c.151C>T 
 p.Arg51Trp 
 Familial 
 Maternal 
 Multiplex 
 GEN568R008 
 missense_variant 
 c.934A>T 
 p.Ile312Phe 
 Unknown 
 Not maternal 
 Simplex 
 GEN568R009 
 missense_variant 
 c.1261G>A 
 p.Asp421Asn 
 Unknown 
  
 Simplex 
 GEN568R010 
 inframe_deletion 
  
 p.Asn336del 
 Familial 
 Paternal 
 Simplex 
 GEN568R011a 
 inframe_deletion 
 c.1078_1080del 
 p.Ser360del 
 Familial 
 Both parents 
  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN568C001 
 microsatellite, 3_prime_UTR_variant 
  
  
 3'UTR 
 Trios composed of father, mother, and affected offspring with DSM-III-R-diagnosed ADHD (N = 49) and undifferentiated attention-deficit disorder (UADD) (N = 8) 
 Discovery 
 GEN568C002 
 microsatellite, 3_prime_UTR_variant 
  
  
 3'UTR 
 40 ADHD probands and their parents 
 Replication 
 GEN568C003 
 microsatellite, 3_prime_UTR_variant 
  
  
 3'UTR 
 133 German IGE subjects and 223 ethnically matched controls 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
5
Deletion-Duplication
 36
 
5
Duplication
 1
 
5
Duplication
 2
 
5
Deletion
 1
 
5
Deletion
 2
 
5
Deletion
 3
 
5
Deletion
 4
 
5
Deletion
 10
 
5
Deletion
 4
 
5
Deletion
 4
 

Model Summary

Rats overexpressing the dopamine transporter display behavioral and neurobiological abnormalities with relevance to repetitive disorders.

References

Type
Title
Author, Year
Primary
Rats overexpressing the dopamine transporter display behavioral and neurobiological abnormalities with relevance to repetitive disorders.

R_SLC6A3_1_TG

Model Type: Genetic
Model Genotype: Heterozygous
Mutation: Transgene construct of murine dopamine transporter with rat NSE promoter and bovine growth hormone polyadenylation sequence excised with NruI/NaeI restriction enzymes from its plasmid vector.
Allele Type: Transgenic
Strain of Origin: Sprague Dawley Hanover
Genetic Background: Sprague Dawley
ES Cell Line:
Mutant ES Cell Line:
Model Source: Janvier Labs

R_SLC6A3_1_TG

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
General locomotor activity: ambulatory activity1
Decreased
Description: Transgenic rats traveled significantly less than wildtype rats. Transgenic rats exhibited decreased locomotion after amphetamine challenge, compared to wildtype controls.
Exp Paradigm: Open field test; 2.0 mg/kg amphetamine-induced locomotion
 Open field test
 Unreported
Neuronal number: interneurons1
Decreased
Description: Transgenic rats exhibited a significant reduction of parvalbumin-positive (PV+) interneurons in caudate putamen
Exp Paradigm: Immunohistochemistry: parvalbumin
 Immunohistochemistry
 Unreported
Hippocampal morphology1
Increased
Description: Transgenic rats exhibited a significant increase in hippocampus volume
Exp Paradigm: Magnetic resonance imaging (MRI)
 Magnetic resonance imaging (mri)
 Unreported
Neurotransmitter release: catecholamines1
Decreased
Description: Transgenic rats exhibited a decrease in tissue dopamine contents in the orbitofrontal cortex, nucleus accumbens, caudate putamen.
Exp Paradigm: High-performance liquid chromatography (HPLC)
 High-performance liquid chromatography (hplc)
 Unreported
Neurotransmitter metabolism1
Increased
Description: Transgenic rats exhibited higher DOPAC content and dopamine turnover.
Exp Paradigm: High-performance liquid chromatography (HPLC)
 High-performance liquid chromatography (hplc)
 Unreported
Neuronal activation1
Increased
Description: Transgenic rats exhibited a significant increase in cFos-expressing cells in orbitofrontal cortex
Exp Paradigm: Immunohistochemistry: cFos
 Immunohistochemistry
 Unreported
Neurotransmitter release: catecholamines1
Increased
Description: Transgenic rats exhibited an increase in tissue dopamine contents in the hippocampus, subthalamic nucleus.
Exp Paradigm: High-performance liquid chromatography (HPLC)
 High-performance liquid chromatography (hplc)
 Unreported
Event related oscillations (eros) in electroencephalography (eeg)1
Increased
Description: Transgenic rats show increased alpha, beta and gamma activity in subthalamic nucleus, and increased beta and gamma activity in both the medial prefrontal cortex and the nucleus accumbens.
Exp Paradigm: In vivo local field potential (LFP) recordings
 In vivo local field potential (lfp) recordings
 Unreported
Stereotypy1
Increased
Description: Transgenic rats exhibited a significant increase in repetitive oral movements which emerged 80-120 minutes after injection
Exp Paradigm: 2.0 mg/kg amphetamine-induced repetitive behaviors
 Observation of repetitive behavior
 Unreported
Size/growth1
Decreased
Description: Transgenic rats exhibited significantly decreased body weights.
Exp Paradigm: Body weight measurement
 Body weight measurement
 Unreported
Targeted expression1
Increased
Description: Transgenic rats exhibited increased striatal protein levels of DAT transporter, and increased Slc6a3 mRNA levels in medial prefrontal cortex, orbitofrontal cortex, nucleus accumbens, caudate putamen, globus pallidus, hippocampus, thalamus, subthalamic nucleus
Exp Paradigm: Western blot
 Western blot
 Unreported
Enzyme activity1
Increased
Description: Transgenic rats exhibited significantly increased MAO activity compared to wildtype rats.
Exp Paradigm: Caudate putamen punches were homogenized by ultrasonication for fluorometric assay kit.
 Enzyme assay
 Unreported
Targeted expression1
Increased
Description: Transgenic rats exhibited increased striatal protein levels of DAT transporter, and increased Slc6a3 mRNA levels in medial prefrontal cortex, orbitofrontal cortex, nucleus accumbens, caudate putamen, globus pallidus, hippocampus, thalamus, subthalamic nucleus
Exp Paradigm: Quantitative PCR (qRT-PCR)
 Quantitative pcr (qrt-pcr)
 Unreported
Gene expression1
Increased
Description: Transgenic rats have increased expression of Drd1 and Drd2 in orbitofrontal cortex, nucleus accumbens, caudate putamen; increased expression of Drd1 in hippocampus.
Exp Paradigm: Quantitative PCR (qRT-PCR)
 Quantitative pcr (qrt-pcr)
 Unreported
Gene expression1
Decreased
Description: Transgenic rats have decreased expression of Drd1 and Drd2 in medial prefrontal cortex, thalamus and subthalamic nucleus.
Exp Paradigm: Quantitative PCR (qRT-PCR)
 Quantitative pcr (qrt-pcr)
 Unreported
Anxiety1
 No change
 Elevated plus maze test
 Unreported
Depression1
 No change
 Forced swim test
 Unreported
Depression1
 No change
 Sucrose preference test
 Unreported
Brain size1
 No change
 Magnetic resonance imaging (mri)
 Unreported
Neuronal number1
 No change
 Immunohistochemistry
 Unreported
Perseveration1
 No change
 Observation of repetitive behavior
 Unreported
Self grooming: perseveration1
 No change
 Observation of repetitive behavior
 Unreported
Sensorimotor gating1
 No change
 Prepulse inhibition
 Unreported
 Not Reported: Circadian sleep/wake cycle, Communications, Immune response, Learning & memory, Maternal behavior, Physiological parameters, Seizure, Social behavior


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
CAMK2A calcium/calmodulin-dependent protein kinase II alpha 815 Q9UQM7 Biotinylation assay; IP/WB
Sakrikar D , et al. 2012
DRD2 dopamine receptor D2 1813 P14416 IP/WB; GST; in vitro binding assay
Lee FJ , et al. 2007
EPN1 epsin 1 NM_013333 Q9Y6I3 Immunofluorescence; IP/WB; Biotinylation assay
Sorkina T , et al. 2006
EPS15 epidermal growth factor receptor pathway substrate 15 2060 B7Z240 Immunofluorescence; IP/WB; Biotinylation assay
Sorkina T , et al. 2006
FMR1 fragile X mental retardation 1 2332 G8JLE9 PAR-CLIP
Ascano M Jr , et al. 2012
NEDD4 neural precursor cell expressed, developmentally down-regulated 4 4734 P46934 Immunofluorescence; IP/WB; Biotinylation assay
Sorkina T , et al. 2006
PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 5071 O60260 Biotinylation assay; IP/WB
IP/WB; WB
Jiang H , et al. 2004
PICK1 protein interacting with PRKCA 1 9463 Q9NRD5 Y2H; IP/WB
Torres GE , et al. 2001
SNCA synuclein, alpha (non A4 component of amyloid precursor) 6622 P37840 IP/WB
Wersinger C and Sidhu A 2005
STX1A syntaxin 1A (brain) 6804 Q16623 GST; IP/WB
Binda F , et al. 2008
TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 7041 O43294 IP/WB; GST; Biotinylation assay
Carneiro AM , et al. 2002
TUBA1B Tubulin alpha-1B chain 500929 Q6P9V9 IP/WB
Wersinger C and Sidhu A 2005
TUBB1 Protein Tubb1 679312 M0R8B6 IP/WB
Wersinger C and Sidhu A 2005
UBC ubiquitin C 7316 P63279 Immunofluorescence; IP/WB; Biotinylation assay
Sorkina T , et al. 2006
PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 5071 O60260 Biotinylation assay; IP/WB
IP/WB; WB
Jiang H , et al. 2004
Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component 293184 G3V897 Y2H; IP/WB; Co-localization
De Gois S , et al. 2015
PRKCB protein kinase C, beta 25023 P68403 IP/WB
Johnson LA , et al. 2005

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