Summary Statistics:
ASD Reports: 16
Recent Reports: 4
Annotated variants: 14
Associated CNVs: 10
Evidence score: 3
Gene Score: 3
Relevance to Autism
Functional characterization of a de novo missense variant in the SLC6A3 gene originally identified in a simplex ASD case as part of a whole-exome sequencing study in 175 ASD parent-child trios (originally described by Neale et al. in a 2012 Nature report) showed that this variant (T356M) resulted in anomalous dopamine transporter function and hyperactivity when expressed in the DA neurons of Drosophila (Hamilton et al., 2013). A missense variant in this same gene (p.Ala559Val), previously identified in individuals with ADHD (Mazei-Robison et al., 2005) and bipolar disorder (Grunhage et al., 2000), was recently identified in two unrelated male ASD probands and shown to alter dopamine function and trafficking (Bowton et al., 2014).
Molecular Function
This gene encodes an amine transporter that terminates the action of dopamine by its high affinity sodium-dependent reuptake into presynaptic terminals. Mutations in this gene are associated with Parkinsonism-dystonia infantile (PKDYS) [MIM:613135], while variation in the number of 40 bp tandem repeats in the 3'UTR of this gene is associated with idiopathic epilepsy, attention-deficit hyperactivity disorder, dependence on alcohol and cocaine, susceptibility to Parkinson disease and protection against nicotine dependence.
References
Primary
De novo mutation in the dopamine transporter gene associates dopamine dysfunction with autism spectrum disorder.
ASD
Positive Association
Confirmation of association between attention deficit hyperactivity disorder and a dopamine transporter polymorphism.
ADHD
Positive Association
Variation of the genes encoding the human glutamate EAAT2, serotonin and dopamine transporters and Susceptibility to idiopathic generalized epilepsy.
Epilepsy
Support
Missense dopamine transporter mutations associate with adult parkinsonism and ADHD.
ADHD, early-onset parkinsonism
Support
Attention deficit/hyperactivity disorder-derived coding variation in the dopamine transporter disrupts microdomain targeting and trafficking regula...
ADHD
Support
Anomalous dopamine release associated with a human dopamine transporter coding variant.
Support
Sequence variation in the human dopamine transporter gene in children with attention deficit hyperactivity disorder.
ADHD
Support
SLC gene mutations and pediatric neurological disorders: diverse clinical phenotypes in a Saudi Arabian population
DD
Support
Systematic screening for DNA sequence variation in the coding region of the human dopamine transporter gene (DAT1).
BPD
Support
Structural, functional, and behavioral insights of dopamine dysfunction revealed by a deletion in SLC6A3.
ASD
Support
Rare autism-associated variants implicate syntaxin 1 (STX1 R26Q) phosphorylation and the dopamine transporter (hDAT R51W) in dopamine neurotransmis...
ASD
Highly Cited
Association of attention-deficit disorder and the dopamine transporter gene.
ADHD
Recent Recommendation
The rare DAT coding variant Val559 perturbs DA neuron function, changes behavior, and alters in vivo responses to psychostimulants.
Recent Recommendation
SLC6A3 coding variant Ala559Val found in two autism probands alters dopamine transporter function and trafficking.
ASD
Recent Recommendation
Autism-linked dopamine transporter mutation alters striatal dopamine neurotransmission and dopamine-dependent behaviors.
ASD
Recent Recommendation
Neuropsychiatric disease-associated genetic variants of the dopamine transporter display heterogeneous molecular phenotypes.
GEN568R001
missense_variant
c.1067C>T
p.Thr356Met
De novo
Simplex
GEN568R002
missense_variant
c.1676C>T
p.Ala559Val
Familial
Maternal
Simplex
GEN568R003
missense_variant
c.1676C>T
p.Ala559Val
Familial
Maternal
Multiplex
GEN568R004
missense_variant
c.*163A>G
Familial
Maternal
Simplex
GEN568R005
missense_variant
c.1676C>T
p.Ala559Val
Unknown
Not maternal
Multi-generational
GEN568R006
missense_variant
c.1805A>G
p.Glu602Gly
Familial
Paternal
Simplex
GEN568R007
missense_variant
c.151C>T
p.Arg51Trp
Familial
Maternal
Multiplex
GEN568R008
missense_variant
c.934A>T
p.Ile312Phe
Unknown
Not maternal
Simplex
GEN568R009
missense_variant
c.1261G>A
p.Asp421Asn
Unknown
Simplex
GEN568R010
inframe_deletion
p.Asn336del
Familial
Paternal
Simplex
GEN568R011a
inframe_deletion
c.1078_1080del
p.Ser360del
Familial
Both parents
GEN568C001
microsatellite, 3_prime_UTR_variant
3'UTR
Trios composed of father, mother, and affected offspring with DSM-III-R-diagnosed ADHD (N = 49) and undifferentiated attention-deficit disorder (UADD) (N = 8)
Discovery
GEN568C002
microsatellite, 3_prime_UTR_variant
3'UTR
40 ADHD probands and their parents
Replication
GEN568C003
microsatellite, 3_prime_UTR_variant
3'UTR
133 German IGE subjects and 223 ethnically matched controls
Discovery
5
Deletion-Duplication
36
Summary Statistics:
# of Reports: 1
# of Models: 4
External Links
Model Summary
Rats overexpressing the dopamine transporter display behavioral and neurobiological abnormalities with relevance to repetitive disorders.
References
Primary
Rats overexpressing the dopamine transporter display behavioral and neurobiological abnormalities with relevance to repetitive disorders.
Model Type:
Genetic
Model Genotype:
Heterozygous
Mutation:
Transgene construct of murine dopamine transporter with rat NSE promoter and bovine growth hormone polyadenylation sequence excised with NruI/NaeI restriction enzymes from its plasmid vector.
Allele Type: Transgenic
Strain of Origin: Sprague Dawley Hanover
Genetic Background: Sprague Dawley
ES Cell Line:
Mutant ES Cell Line:
Model Source: Janvier Labs
General locomotor activity: ambulatory activity1
Decreased
View More
Description: Transgenic rats traveled significantly less than wildtype rats. Transgenic rats exhibited decreased locomotion after amphetamine challenge, compared to wildtype controls.
Exp Paradigm: Open field test; 2.0 mg/kg amphetamine-induced locomotion
Open field test
Unreported
Neuronal number: interneurons1
Decreased
View More
Description: Transgenic rats exhibited a significant reduction of parvalbumin-positive (PV+) interneurons in caudate putamen
Exp Paradigm: Immunohistochemistry: parvalbumin
Immunohistochemistry
Unreported
Increased
View More
Description: Transgenic rats exhibited a significant increase in hippocampus volume
Exp Paradigm: Magnetic resonance imaging (MRI)
Magnetic resonance imaging (mri)
Unreported
Neurotransmitter release: catecholamines1
Increased
View More
Description: Transgenic rats exhibited an increase in tissue dopamine contents in the hippocampus, subthalamic nucleus.
Exp Paradigm: High-performance liquid chromatography (HPLC)
High-performance liquid chromatography (hplc)
Unreported
Event related oscillations (eros) in electroencephalography (eeg)1
Increased
View More
Description: Transgenic rats show increased alpha, beta and gamma activity in subthalamic nucleus, and increased beta and gamma activity in both the medial prefrontal cortex and the nucleus accumbens.
Exp Paradigm: In vivo local field potential (LFP) recordings
In vivo local field potential (lfp) recordings
Unreported
Neurotransmitter release: catecholamines1
Decreased
View More
Description: Transgenic rats exhibited a decrease in tissue dopamine contents in the orbitofrontal cortex, nucleus accumbens, caudate putamen.
Exp Paradigm: High-performance liquid chromatography (HPLC)
High-performance liquid chromatography (hplc)
Unreported
Neurotransmitter metabolism1
Increased
View More
Description: Transgenic rats exhibited higher DOPAC content and dopamine turnover.
Exp Paradigm: High-performance liquid chromatography (HPLC)
High-performance liquid chromatography (hplc)
Unreported
Increased
View More
Description: Transgenic rats exhibited a significant increase in cFos-expressing cells in orbitofrontal cortex
Exp Paradigm: Immunohistochemistry: cFos
Immunohistochemistry
Unreported
Increased
View More
Description: Transgenic rats exhibited a significant increase in repetitive oral movements which emerged 80-120 minutes after injection
Exp Paradigm: 2.0 mg/kg amphetamine-induced repetitive behaviors
Observation of repetitive behavior
Unreported
Decreased
View More
Description: Transgenic rats exhibited significantly decreased body weights.
Exp Paradigm: Body weight measurement
Body weight measurement
Unreported
Decreased
View More
Description: Transgenic rats have decreased expression of Drd1 and Drd2 in medial prefrontal cortex, thalamus and subthalamic nucleus.
Exp Paradigm: Quantitative PCR (qRT-PCR)
Quantitative pcr (qrt-pcr)
Unreported
Increased
View More
Description: Transgenic rats exhibited increased striatal protein levels of DAT transporter, and increased Slc6a3 mRNA levels in medial prefrontal cortex, orbitofrontal cortex, nucleus accumbens, caudate putamen, globus pallidus, hippocampus, thalamus, subthalamic nucleus
Exp Paradigm: Western blot
Western blot
Unreported
Increased
View More
Description: Transgenic rats exhibited significantly increased MAO activity compared to wildtype rats.
Exp Paradigm: Caudate putamen punches were homogenized by ultrasonication for fluorometric assay kit.
Enzyme assay
Unreported
Increased
View More
Description: Transgenic rats exhibited increased striatal protein levels of DAT transporter, and increased Slc6a3 mRNA levels in medial prefrontal cortex, orbitofrontal cortex, nucleus accumbens, caudate putamen, globus pallidus, hippocampus, thalamus, subthalamic nucleus
Exp Paradigm: Quantitative PCR (qRT-PCR)
Quantitative pcr (qrt-pcr)
Unreported
Increased
View More
Description: Transgenic rats have increased expression of Drd1 and Drd2 in orbitofrontal cortex, nucleus accumbens, caudate putamen; increased expression of Drd1 in hippocampus.
Exp Paradigm: Quantitative PCR (qRT-PCR)
Quantitative pcr (qrt-pcr)
Unreported
No change
Elevated plus maze test
Unreported
No change
Forced swim test
Unreported
No change
Sucrose preference test
Unreported
No change
Magnetic resonance imaging (mri)
Unreported
No change
Immunohistochemistry
Unreported
No change
Observation of repetitive behavior
Unreported
Self grooming: perseveration1
No change
Observation of repetitive behavior
Unreported
No change
Prepulse inhibition
Unreported
Not Reported:
Circadian sleep/wake cycle, Communications, Immune response, Learning & memory, Maternal behavior, Physiological parameters, Seizure, Social behavior
Summary Statistics:
Total Interactions: 17
Total Publications: 11
Show all nodes
Hide non-ASD
Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
CAMK2A
calcium/calmodulin-dependent protein kinase II alpha
815
Q9UQM7
Biotinylation assay; IP/WB
Sakrikar D , et al. 2012
DRD2
dopamine receptor D2
1813
P14416
IP/WB; GST; in vitro binding assay
Lee FJ , et al. 2007
EPN1
epsin 1
NM_013333
Q9Y6I3
Immunofluorescence; IP/WB; Biotinylation assay
Sorkina T , et al. 2006
EPS15
epidermal growth factor receptor pathway substrate 15
2060
B7Z240
Immunofluorescence; IP/WB; Biotinylation assay
Sorkina T , et al. 2006
FMR1
fragile X mental retardation 1
2332
G8JLE9
PAR-CLIP
Ascano M Jr , et al. 2012
NEDD4
neural precursor cell expressed, developmentally down-regulated 4
4734
P46934
Immunofluorescence; IP/WB; Biotinylation assay
Sorkina T , et al. 2006
PARK2
parkinson protein 2, E3 ubiquitin protein ligase (parkin)
5071
O60260
Biotinylation assay; IP/WB
IP/WB; WB
Jiang H , et al. 2004
PICK1
protein interacting with PRKCA 1
9463
Q9NRD5
Y2H; IP/WB
Torres GE , et al. 2001
SNCA
synuclein, alpha (non A4 component of amyloid precursor)
6622
P37840
IP/WB
Wersinger C and Sidhu A 2005
STX1A
syntaxin 1A (brain)
6804
Q16623
GST; IP/WB
Binda F , et al. 2008
TGFB1I1
Transforming growth factor beta-1-induced transcript 1 protein
7041
O43294
IP/WB; GST; Biotinylation assay
Carneiro AM , et al. 2002
TUBA1B
Tubulin alpha-1B chain
500929
Q6P9V9
IP/WB
Wersinger C and Sidhu A 2005
TUBB1
Protein Tubb1
679312
M0R8B6
IP/WB
Wersinger C and Sidhu A 2005
UBC
ubiquitin C
7316
P63279
Immunofluorescence; IP/WB; Biotinylation assay
Sorkina T , et al. 2006
PARK2
parkinson protein 2, E3 ubiquitin protein ligase (parkin)
5071
O60260
Biotinylation assay; IP/WB
IP/WB; WB
Jiang H , et al. 2004
Ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component
293184
G3V897
Y2H; IP/WB; Co-localization
De Gois S , et al. 2015
PRKCB
protein kinase C, beta
25023
P68403
IP/WB
Johnson LA , et al. 2005