HELP     Sign In
Search

Relevance to Autism

Functional characterization of a de novo missense variant in the SLC6A3 gene originally identified in a simplex ASD case as part of a whole-exome sequencing study in 175 ASD parent-child trios (originally described by Neale et al. in a 2012 Nature report) showed that this variant (T356M) resulted in anomalous dopamine transporter function and hyperactivity when expressed in the DA neurons of Drosophila (Hamilton et al., 2013). A missense variant in this same gene (p.Ala559Val), previously identified in individuals with ADHD (Mazei-Robison et al., 2005) and bipolar disorder (Grunhage et al., 2000), was recently identified in two unrelated male ASD probands and shown to alter dopamine function and trafficking (Bowton et al., 2014).

Molecular Function

This gene encodes an amine transporter that terminates the action of dopamine by its high affinity sodium-dependent reuptake into presynaptic terminals. Mutations in this gene are associated with Parkinsonism-dystonia infantile (PKDYS) [MIM:613135], while variation in the number of 40 bp tandem repeats in the 3'UTR of this gene is associated with idiopathic epilepsy, attention-deficit hyperactivity disorder, dependence on alcohol and cocaine, susceptibility to Parkinson disease and protection against nicotine dependence.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
De novo mutation in the dopamine transporter gene associates dopamine dysfunction with autism spectrum disorder.
ASD
Positive Association
Confirmation of association between attention deficit hyperactivity disorder and a dopamine transporter polymorphism.
ADHD
Positive Association
Variation of the genes encoding the human glutamate EAAT2, serotonin and dopamine transporters and Susceptibility to idiopathic generalized epilepsy.
Epilepsy
Support
Rare autism-associated variants implicate syntaxin 1 (STX1 R26Q) phosphorylation and the dopamine transporter (hDAT R51W) in dopamine neurotransmis...
ASD
Support
Missense dopamine transporter mutations associate with adult parkinsonism and ADHD.
ADHD, early-onset parkinsonism
Support
Attention deficit/hyperactivity disorder-derived coding variation in the dopamine transporter disrupts microdomain targeting and trafficking regula...
ADHD
Support
Anomalous dopamine release associated with a human dopamine transporter coding variant.
Support
Sequence variation in the human dopamine transporter gene in children with attention deficit hyperactivity disorder.
ADHD
Support
SLC gene mutations and pediatric neurological disorders: diverse clinical phenotypes in a Saudi Arabian population
DD
Support
Systematic screening for DNA sequence variation in the coding region of the human dopamine transporter gene (DAT1).
BPD
Support
Structural, functional, and behavioral insights of dopamine dysfunction revealed by a deletion in SLC6A3.
ASD
Highly Cited
Association of attention-deficit disorder and the dopamine transporter gene.
ADHD
Recent Recommendation
Autism-linked dopamine transporter mutation alters striatal dopamine neurotransmission and dopamine-dependent behaviors.
ASD
Recent Recommendation
Neuropsychiatric disease-associated genetic variants of the dopamine transporter display heterogeneous molecular phenotypes.
Recent Recommendation
The rare DAT coding variant Val559 perturbs DA neuron function, changes behavior, and alters in vivo responses to psychostimulants.
Recent Recommendation
SLC6A3 coding variant Ala559Val found in two autism probands alters dopamine transporter function and trafficking.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN568R001 
 missense_variant 
 c.1067C>T 
 p.Thr356Met 
 De novo 
  
 Simplex 
 GEN568R002 
 missense_variant 
 c.1676C>T 
 p.Ala559Val 
 Familial 
 Maternal 
 Simplex 
 GEN568R003 
 missense_variant 
 c.1676C>T 
 p.Ala559Val 
 Familial 
 Maternal 
 Multiplex 
 GEN568R004 
 missense_variant 
 c.*163A>G 
  
 Familial 
 Maternal 
 Simplex 
 GEN568R005 
 missense_variant 
 c.1676C>T 
 p.Ala559Val 
 Unknown 
 Not maternal 
 Multi-generational 
 GEN568R006 
 missense_variant 
 c.1805A>G 
 p.Glu602Gly 
 Familial 
 Paternal 
 Simplex 
 GEN568R007 
 missense_variant 
 c.151C>T 
 p.Arg51Trp 
 Familial 
 Maternal 
 Multiplex 
 GEN568R008 
 missense_variant 
 c.934A>T 
 p.Ile312Phe 
 Unknown 
 Not maternal 
 Simplex 
 GEN568R009 
 missense_variant 
 c.1261G>A 
 p.Asp421Asn 
 Unknown 
  
 Simplex 
 GEN568R010 
 inframe_deletion 
  
 p.Asn336del 
 Familial 
 Paternal 
 Simplex 
 GEN568R011a 
 inframe_deletion 
 c.1078_1080del 
 p.Ser360del 
 Familial 
 Both parents 
  

Common

Variant ID
Polymorphism
SNP ID
Allele Change
Residue Change
Population Origin
Population Stage
Author, Year
 GEN568C001 
 microsatellite, 3_prime_UTR_variant 
  
  
 3'UTR 
 Trios composed of father, mother, and affected offspring with DSM-III-R-diagnosed ADHD (N = 49) and undifferentiated attention-deficit disorder (UADD) (N = 8) 
 Discovery 
 GEN568C002 
 microsatellite, 3_prime_UTR_variant 
  
  
 3'UTR 
 40 ADHD probands and their parents 
 Replication 
 GEN568C003 
 microsatellite, 3_prime_UTR_variant 
  
  
 3'UTR 
 133 German IGE subjects and 223 ethnically matched controls 
 Discovery 
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
5
Deletion-Duplication
 36
 
5
Duplication
 1
 
5
Duplication
 2
 
5
Deletion
 1
 
5
Deletion
 2
 
5
Deletion
 3
 
5
Deletion
 4
 
5
Deletion
 10
 
5
Deletion
 4
 
5
Deletion
 4
 

Model Summary

DAT knockout flies and flies expressing a human DAT ASD mutant in a knockout background exhibit increased locomotor activity and are insensitive to amphetamine in further increasing locomotion.

References

Type
Title
Author, Year
Primary
De novo mutation in the dopamine transporter gene associates dopamine dysfunction with autism spectrum disorder.
Primary
Rare autism-associated variants implicate syntaxin 1 (STX1 R26Q) phosphorylation and the dopamine transporter (hDAT R51W) in dopamine neurotransmis...

F_DAT_1_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: dDAT knockout construct DAT^fmn is a null allele.
Allele Type: Knockout
Strain of Origin:
Genetic Background: w^1118
ES Cell Line:
Mutant ES Cell Line:
Model Source: Bloomington Indiana

F_DAT_2_TG_KI_HDAT-T356M

Model Type: Genetic
Model Genotype: Transgenic
Mutation: Transgene with ASD human mutation T356M is expressed using a TH driver in a dDAT knockout background.
Allele Type: ASD LOF mutation
Strain of Origin:
Genetic Background: w^1118
ES Cell Line:
Mutant ES Cell Line:
Model Source: Bloomington Indiana

F_DAT_3_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: DAT^fmn mutation was discovered on second chromosome when isogenized (Kume et al., 2005). DAT^fmn mutation was then backcrossed with w flies for seven generations to recombinationally separate it from other lesions.
Allele Type: Knockout
Strain of Origin:
Genetic Background: Bloomington 6326
ES Cell Line:
Mutant ES Cell Line:
Model Source:

F_DAT_4_KO_HM_AMPH

Model Type: Genetic
Model Genotype: Homozygous
Mutation: DAT^fmn mutation was discovered on second chromosome when isogenized (Kume et al., 2005). DAT^fmn mutation was then backcrossed with w flies for seven generations to recombinationally separate it from other lesions. Adult males were fed sucrose solution containing 1 mM of amphetamine.
Allele Type: Knockout
Strain of Origin:
Genetic Background: Bloomington 6326
ES Cell Line:
Mutant ES Cell Line:
Model Source:

F_DAT_5_TG_HDAT-R/W

Model Type: Genetic
Model Genotype: Transgenic
Mutation: hDAT-R/W transgene was cloned into pBI-UASC and constructs were injected into embryos.
Allele Type: Humanized LOF mutation
Strain of Origin:
Genetic Background: Bloomington 6236
ES Cell Line:
Mutant ES Cell Line:
Model Source:

F_DAT_6_TG_HDAT-R/W_AMPH

Model Type: Genetic
Model Genotype: Transgenic
Mutation: hDAT-R/W transgene was cloned into pBI-UASC and constructs were injected into embryos. Adult males were fed sucrose solution containing 1 mM of amphetamine.
Allele Type: Humanized LOF mutation
Strain of Origin:
Genetic Background: Bloomington 6236
ES Cell Line:
Mutant ES Cell Line:
Model Source:

F_DAT_1_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Hyperactivity1
Decreased
Description: Knockout dDAT flies do not show a significant increase in locomotor activity in response to amphetamine, compared to vehicle control, this is in contrast to flies expressing wildtype hDAT that show a significant increase in locomotor activity in response to amphetamine.
Exp Paradigm: For the amphetamine-induced locomotion, males were starved for 6 h and then fed sucrose (5mM) containing either amphetamine (10mM) or vehicle.
 Beam crossing
 3-6 dpe
General locomotor activity1
Increased
Description: dDAT knockout flies show increased locomotor activity compared to flies expressing a transgenic wildtype human DAT
Exp Paradigm: Locomotion was recorded by beam breaks and analyzed using equipment/software
 Beam crossing
 3-6 dpe
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

F_DAT_2_TG_KI_HDAT-T356M

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Hyperactivity1
Decreased
Description: Flies expressing a transgenic mutant human DAT do not show a significant increase in locomotor activity in response to amphetamine, compared to vehicle control, this is in contrast to flies expressing wildtype hDAT that show a significant increase in locomotor activity in response to amphetamine.
Exp Paradigm: For the amphetamine-induced locomotion, males were starved for 6 h and then fed sucrose (5mM) containing either amphetamine (10mM) or vehicle.
 Beam crossing
 3-6 dpe
General locomotor activity1
Increased
Description: Flies expressing a transgenic mutant human DAT show increased locomotor activity compared to flies expressing a transgenic wildtype human DAT
Exp Paradigm: Locomotion was recorded by beam breaks and analyzed using equipment/software
 Beam crossing
 3-6 dpe
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

F_DAT_3_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
General locomotor activity: ambulatory activity1
 No change
 Not reported
 3 days
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

F_DAT_4_KO_HM_AMPH

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
General locomotor activity: ambulatory activity1
Decreased
Description: Mutants showed a decrease in the counts of beam breaks in response to AMPH compared to controls.
 Not reported
 3 days
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

F_DAT_5_TG_HDAT-R/W

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
General locomotor activity: ambulatory activity1
 No change
 Not reported
 3 days
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior

F_DAT_6_TG_HDAT-R/W_AMPH

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
General locomotor activity: ambulatory activity1
Decreased
Description: Mutants showed a decrease in the counts of beam breaks in response to AMPH compared to controls.
 Not reported
 3 days
 Not Reported: Circadian sleep/wake cycle, Communications, Developmental profile, Emotion, Immune response, Learning & memory, Maternal behavior, Molecular profile, Neuroanatomy / ultrastructure / cytoarchitecture, Neurophysiology, Physiological parameters, Repetitive behavior, Seizure, Sensory, Social behavior


Interactor Symbol Interactor Name Interactor Organism Entrez ID Uniprot ID Interaction Type Evidence Reference
CAMK2A calcium/calmodulin-dependent protein kinase II alpha 815 Q9UQM7 Biotinylation assay; IP/WB
Sakrikar D , et al. 2012
DRD2 dopamine receptor D2 1813 P14416 IP/WB; GST; in vitro binding assay
Lee FJ , et al. 2007
EPN1 epsin 1 NM_013333 Q9Y6I3 Immunofluorescence; IP/WB; Biotinylation assay
Sorkina T , et al. 2006
EPS15 epidermal growth factor receptor pathway substrate 15 2060 B7Z240 Immunofluorescence; IP/WB; Biotinylation assay
Sorkina T , et al. 2006
FMR1 fragile X mental retardation 1 2332 G8JLE9 PAR-CLIP
Ascano M Jr , et al. 2012
NEDD4 neural precursor cell expressed, developmentally down-regulated 4 4734 P46934 Immunofluorescence; IP/WB; Biotinylation assay
Sorkina T , et al. 2006
PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 5071 O60260 Biotinylation assay; IP/WB
IP/WB; WB
Jiang H , et al. 2004
PICK1 protein interacting with PRKCA 1 9463 Q9NRD5 Y2H; IP/WB
Torres GE , et al. 2001
SNCA synuclein, alpha (non A4 component of amyloid precursor) 6622 P37840 IP/WB
Wersinger C and Sidhu A 2005
STX1A syntaxin 1A (brain) 6804 Q16623 GST; IP/WB
Binda F , et al. 2008
TGFB1I1 Transforming growth factor beta-1-induced transcript 1 protein 7041 O43294 IP/WB; GST; Biotinylation assay
Carneiro AM , et al. 2002
TUBA1B Tubulin alpha-1B chain 500929 Q6P9V9 IP/WB
Wersinger C and Sidhu A 2005
TUBB1 Protein Tubb1 679312 M0R8B6 IP/WB
Wersinger C and Sidhu A 2005
UBC ubiquitin C 7316 P63279 Immunofluorescence; IP/WB; Biotinylation assay
Sorkina T , et al. 2006
PARK2 parkinson protein 2, E3 ubiquitin protein ligase (parkin) 5071 O60260 Biotinylation assay; IP/WB
IP/WB; WB
Jiang H , et al. 2004
Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component 293184 G3V897 Y2H; IP/WB; Co-localization
De Gois S , et al. 2015
PRKCB protein kinase C, beta 25023 P68403 IP/WB
Johnson LA , et al. 2005

HELP
Copyright © 2017 MindSpec, Inc.