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Relevance to Autism

Two novel missense variants in the SLC29A4 gene that reduced transport uptake activity in cellular assays (c.412G>A/p.Ala138Thr and c.978T>G/p.Asp326Glu) were identified in a total of six individuals out of a cohort of 248 Caucasian ASD cases (Adamsen et al., 2014).

Molecular Function

This gene encodes a member of the SLC29A/ENT transporter protein family. The encoded membrane protein catalyzes the reuptake of monoamines into presynaptic neurons, thus determining the intensity and duration of monoamine neural signaling. It has been shown to transport several compounds, including serotonin, dopamine, and the neurotoxin 1-methyl-4-phenylpyridinium.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Autism spectrum disorder associated with low serotonin in CSF and mutations in the SLC29A4 plasma membrane monoamine transporter (PMAT) gene.
ASD
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN622R001 
 missense_variant 
 c.412G>A 
 p.Ala138Thr 
 Familial 
  
 Simplex (n=1), multiplex (n=2), unknown (n=2) 
 GEN622R002 
 missense_variant 
 c.978T>G 
 p.Asp326Glu 
 Familial 
  
 Simplex 
 GEN622R003 
 missense_variant 
 c.86A>G 
 p.Asp29Gly 
 Familial 
  
 Unknown 
 GEN622R004 
 splice_region_variant 
 c.416-6C>T 
  
 De novo 
  
  
 GEN622R005 
 missense_variant 
 c.782A>G 
 p.Tyr261Cys 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
7
Deletion-Duplication
 22
 
7
Duplication
 1
 
7
Duplication
 1
 
7
Duplication
 7
 
7
Duplication
 1
 
7
Duplication
 1
 
7
Duplication
 1
 
7
Duplication
 2
 
7
Deletion-Duplication
 1
 
7
Deletion
 2
 

No Animal Model Data Available

No PIN Data Available
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