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Relevance to Autism

De novo variants in the SLC23A1 gene have been identified in ASD probands, including a de novo missense variant (p.Leu465Met) in a proband from the Simons Simplex Collection (Iossifov et al., 2014; Sanders et al., 2015; Yuen et al., 2017). Functional assessment of the ASD-associated p.Leu465Met missense variant in Drosophila using an overexpression-based strategy in Macrogliese et al., 2022 demonstrated that flies overexpressing SLC23A1-p.Leu465Met exhibited increased lethality when compared with reference protein, indicating a gain-of-function effect.

Molecular Function

The absorption of vitamin C into the body and its distribution to organs requires two sodium-dependent vitamin C transporters. This gene encodes one of the two transporters. The encoded protein is active in bulk vitamin C transport involving epithelial surfaces.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder
ASD
Support
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
ASD
Recent Recommendation
Drosophila functional screening of de novo variants in autism uncovers damaging variants and facilitates discovery of rare neurodevelopmental diseases
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1331R001 
 missense_variant 
 c.1393C>A 
 p.Leu465Met 
 De novo 
  
 Simplex 
 GEN1331R002 
 synonymous_variant 
 c.966G>A 
 p.Leu322%3D 
 De novo 
  
 Simplex 
 GEN1331R003 
 intron_variant 
 c.768+18G>A 
  
 De novo 
  
  
 GEN1331R004 
 intron_variant 
 c.768+17C>T 
  
 De novo 
  
  
 GEN1331R005 
 intron_variant 
 c.308+24C>T 
  
 De novo 
  
 Multiplex 
 GEN1331R006 
 intron_variant 
 c.151-91C>T 
  
 De novo 
  
 Multiplex 
 GEN1331R007 
 missense_variant 
 c.1645G>A 
 p.Asp549Asn 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
5
Duplication
 1
 
5
Deletion
 1
 
5
Duplication
 1
 
5
Deletion-Duplication
 8
 
5
Duplication
 3
 
5
Deletion
 1
 

No Animal Model Data Available

No PIN Data Available
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