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Relevance to Autism

Variants in the SIK1 gene were identified in six unrelated individuals presenting with developmental epilepsies; three subjects presenting with infantile spasms subsequently developed intractable epilepsy and an autism plus developmental disorder with absent speech, impaired socialization, and repetitive behaviors (Hansen et al., 2015).

Molecular Function

This gene encodes a serine/threonine-protein kinase involved in various processes such as cell cycle regulation, gluconeogenesis and lipogenesis regulation, muscle growth and differentiation and tumor suppression. It plays several roles in the central nervous system including regulation of the circadian clock (Jagannath et al., 2013) and transcription of corticotropin-releasing hormone in the hypothalamus (Liu et al., 2012).

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
De novo mutations in SIK1 cause a spectrum of developmental epilepsies.
Epilepsy/seizures
DD, ID, autistic features
Support
The contribution of de novo coding mutations to autism spectrum disorder
ASD
Support
The CRTC1-SIK1 pathway regulates entrainment of the circadian clock.
Support
Salt-inducible kinase is involved in the regulation of corticotropin-releasing hormone transcription in hypothalamic neurons in rats.
Support
DD, epilepsy/seizures
Support
Integrating de novo and inherited variants in 42
ASD
Support
Risperidone Mitigates Enhanced Excitatory Neuronal Function and Repetitive Behavior Caused by an ASD-Associated Mutation of SIK1
ASD
Developmental and epileptic encephalopathy-30
Support
Epilepsy-causing sequence variations in SIK1 disrupt synaptic activity response gene expression and affect neuronal morphology.

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN712R001 
 missense_variant 
 c.895C>A 
 p.Pro287Thr 
 De novo 
  
  
 GEN712R002 
 stop_gained 
 c.1039G>T 
 p.Glu347Ter 
 Unknown 
  
  
 GEN712R003 
 missense_variant 
 c.1231A>T 
 p.Ser411Cys 
 De novo 
  
  
 GEN712R004 
 stop_gained 
 c.1840C>T 
 p.Gln614Ter 
 De novo 
  
  
 GEN712R005 
 stop_gained 
 c.1897C>T 
 p.Gln633Ter 
 Unknown 
  
  
 GEN712R006 
 missense_variant 
 c.1906G>A 
 p.Gly636Ser 
 De novo 
  
  
 GEN712R007 
 missense_variant 
 c.991T>A 
 p.Tyr331Asn 
 De novo 
  
 Simplex 
 GEN712R008 
 missense_variant 
 c.1475C>T 
 p.Ser492Phe 
 De novo 
  
  
 GEN712R009 
 missense_variant 
 c.301A>G 
 p.Ile101Val 
 Unknown 
  
 Simplex 
 GEN712R010 
 missense_variant 
 c.1676G>C 
 p.Gly559Ala 
 Unknown 
  
 Simplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
21
Duplication
 3
 
21
Duplication
 11
 
21
Duplication
 2
 
21
Deletion-Duplication
 1
 
21
Deletion
 2
 
21
Deletion
 3
 
21
Deletion
 5
 
21
Deletion-Duplication
 43
 

No Animal Model Data Available

 

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