Summary Statistics:
ASD Reports: 26
Recent Reports: 1
Annotated variants: 84
Associated CNVs: 2
Evidence score: 4
Gene Score: 3
Relevance to Autism
De novo variants in this gene were identified in two separate reports using ASD probands from the Simons Simplex Collection (Sanders et al. 2012a, 2012b). A second de novo LoF variant in this gene was identified in a female patient presenting with ASD, developmental delay, ID, seizures, Chiari I malformation, macrocephaly, and short stature(Lumish et al., 2015).
Molecular Function
Huntington's disease (HD), a neurodegenerative disorder characterized by loss of striatal neurons, is caused by an expansion of a polyglutamine tract in the HD protein huntingtin. This gene encodes a protein belonging to a class of huntingtin interacting proteins characterized by WW motifs. This protein is a histone methyltransferase that is specific for lysine-36 of histone H3, and methylation of this residue is associated with active chromatin. This protein also contains a novel transcriptional activation domain and has been found associated with hyperphosphorylated RNA polymerase II.
References
Primary
Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.
ASD
Support
Luscan-Lumish syndrome, DD
Support
Brief Report: SETD2 Mutation in a Child with Autism, Intellectual Disabilities and Epilepsy.
ASD, ID, epilepsy/seizures
Macrocephaly
Support
Rare genetic susceptibility variants assessment in autism spectrum disorder: detection rate and practical use.
ASD
Support
Whole exome sequencing in females with autism implicates novel and candidate genes.
ASD
Support
SETD2 related overgrowth syndrome: Presentation of four new patients and review of the literature.
Luscan-Lumish syndrome
ASD, DD, ID, macrocepahly
Support
Integrating de novo and inherited variants in 42
ASD
Support
Large-scale discovery of novel genetic causes of developmental disorders.
Unknown diagnosis
Support
Inherited and De Novo Genetic Risk for Autism Impacts Shared Networks.
ASD
Support
Mutational Landscape of Autism Spectrum Disorder Brain Tissue
ASD
Support
De novo mutations in schizophrenia implicate synaptic networks.
ASD
Support
Two novel cases expanding the phenotype of SETD2-related overgrowth syndrome.
Luscan-Lumish syndrome
ASD or autistic behavior
Support
A single center experience with publicly funded clinical exome sequencing for neurodevelopmental disorders or multiple congenital anomalies
ADHD, DD, ID, epilepsy/seizures
Support
Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.
ASD
Support
ASD, DD, ID
ADHD, epilepsy/seizures
Support
Comprehensive molecular testing in patients with high functioning autism spectrum disorder.
ASD
Support
Large-scale targeted sequencing identifies risk genes for neurodevelopmental disorders
ASD, DD
Support
Targeted DNA Sequencing from Autism Spectrum Disorder Brains Implicates Multiple Genetic Mechanisms.
ASD
Support
Genotype-phenotype correlation at codon 1740 of SETD2
DD
Epilepsy/seizures
Recent Recommendation
De Novo Synonymous Mutations in Regulatory Elements Contribute to the Genetic Etiology of Autism and Schizophrenia.
GEN474R001
frameshift_variant
c.6341del
p.Asn2114IlefsTer33
De novo
Simplex
GEN474R002
missense_variant
c.121A>T
p.Ile41Phe
De novo
Simplex
GEN474R003
stop_gained
c.19C>T
p.Gln7Ter
Familial
Maternal
Simplex
GEN474R004
stop_gained
c.1182T>A
p.Cys394Ter
Familial
Paternal
Simplex
GEN474R005
frameshift_variant
CTTCTTTCT>CTTCT
De novo
Unknown
GEN474R006
missense_variant
G>T
p.Lys610O
Unknown
Multiplex
GEN474R007
frameshift_variant
c.2028del
p.Pro677LeufsTer19
De novo
Simplex
GEN474R008
missense_variant
c.4686C>G
p.Phe1562Leu
Unknown
Unknown
GEN474R009
missense_variant
c.1463A>G
p.Tyr488Cys
Unknown
Unknown
GEN474R010
missense_variant
c.6178T>C
p.Ser2060Pro
Familial
Paternal
Multi-generational
GEN474R011
synonymous_variant
c.1986A>G
p.Gln662=
De novo
GEN474R012
frameshift_variant
c.1462_1482delinsAC
p.Ser488ThrfsTer41
De novo
Simplex
GEN474R013
frameshift_variant
c.6422del
p.Gly2141GlufsTer63
De novo
Simplex
GEN474R014
frameshift_variant
c.7356dup
p.Lys2453GlufsTer13
De novo
Multiplex
GEN474R015
stop_gained
c.4276A>T
p.Lys1426Ter
Unknown
GEN474R016
missense_variant
c.4689G>A
p.Met1563Ile
Unknown
Not maternal
GEN474R017
stop_gained
c.6471T>A
p.Tyr2157Ter
De novo
GEN474R018
missense_variant
c.4997A>G
p.Tyr1666Cys
De novo
GEN474R019
stop_gained
c.4801C>T
p.Gln1601Ter
De novo
Multiplex
GEN474R020
missense_variant
c.5218C>T
p.Arg1740Trp
De novo
GEN474R021
missense_variant
c.5218C>T
p.Arg1740Trp
De novo
GEN474R022
missense_variant
c.5218C>T
p.Arg1740Trp
De novo
GEN474R023
missense_variant
c.5218C>T
p.Arg1740Trp
De novo
GEN474R024
missense_variant
c.5218C>T
p.Arg1740Trp
De novo
GEN474R025
missense_variant
c.5218C>T
p.Arg1740Trp
De novo
GEN474R026
missense_variant
c.5086C>T
p.Arg1696Trp
De novo
GEN474R027
missense_variant
c.5218C>T
p.Arg1740Trp
De novo
GEN474R028
missense_variant
c.5218C>T
p.Arg1740Trp
De novo
GEN474R029
missense_variant
c.5086C>T
p.Arg1696Trp
De novo
GEN474R030
missense_variant
c.5218C>T
p.Arg1740Trp
De novo
GEN474R031
missense_variant
c.5218C>T
p.Arg1740Trp
De novo
GEN474R032
missense_variant
c.5087G>A
p.Arg1696Gln
De novo
GEN474R033
missense_variant
c.5219G>A
p.Arg1740Gln
De novo
GEN474R034
missense_variant
c.5219G>A
p.Arg1740Gln
De novo
GEN474R035
stop_gained
c.3651G>A
p.Trp1217Ter
De novo
GEN474R036
splice_site_variant
c.4583+1G>A
Unknown
GEN474R037
frameshift_variant
c.1539del
p.Lys513AsnfsTer2
Unknown
GEN474R038
frameshift_variant
c.1669_1673del
p.Ser557ProfsTer9
Unknown
GEN474R039
frameshift_variant
c.7409_7410insAC
p.His2470GlnfsTer5
Unknown
Not maternal
GEN474R040
missense_variant
c.6997G>A
p.Gly2333Arg
Unknown
GEN474R041
missense_variant
c.6161C>T
p.Pro2054Leu
Unknown
GEN474R042
missense_variant
c.6394C>T
p.Arg2132Trp
Unknown
GEN474R043
frameshift_variant
c.4210del
p.Arg1407GlyfsTer5
Unknown
GEN474R044
frameshift_variant
c.4210del
p.Arg1407GlyfsTer5
Unknown
GEN474R045
stop_gained
c.4783G>T
p.Glu1595Ter
Unknown
GEN474R046
frameshift_variant
c.1540C>A
p.Leu514Ile
Unknown
GEN474R047
missense_variant
c.5218C>T
p.Arg1740Trp
Unknown
GEN474R048
missense_variant
c.4649C>T
p.Ala1550Val
Unknown
GEN474R049
missense_variant
c.6161C>T
p.Pro2054Leu
Unknown
GEN474R050
missense_variant
c.5057G>A
p.Arg1686Gln
Unknown
GEN474R051
missense_variant
c.7429G>A
p.Glu2477Lys
Unknown
GEN474R052
frameshift_variant
c.1748_1751del
p.Lys583SerfsTer17
De novo
Simplex
GEN474R053
missense_variant
c.1463A>G
p.Tyr488Cys
Unknown
GEN474R054
synonymous_variant
c.7089C>G
p.Pro2363%3D
Unknown
GEN474R055
splice_site_variant
c.7534-1G>T
De novo
Multiplex
GEN474R056
inframe_deletion
c.5282_5299del
p.Thr1761_Leu1767delinsMet
De novo
GEN474R057
synonymous_variant
c.4341C>T
p.Pro1447%3D
De novo
GEN474R058
synonymous_variant
c.1986A>G
p.Gln662%3D
De novo
GEN474R059
missense_variant
c.614C>T
p.Ser205Phe
Familial
Multiplex
GEN474R060
missense_variant
c.1415G>A
p.Arg472His
Familial
Multiplex
GEN474R061
inframe_deletion
c.2382_2384del
p.Ser794del
De novo
Simplex
GEN474R062
frameshift_variant
c.5700_5703dup
p.Ala1902ArgfsTer3
De novo
Simplex
GEN474R063
missense_variant
c.4586G>C
p.Cys1529Ser
De novo
GEN474R064
inframe_deletion
c.2598_2615del
p.His866_Tyr871del
Familial
Paternal
GEN474R065
stop_gained
c.19C>T
p.Gln7Ter
Unknown
GEN474R066
stop_gained
c.19C>T
p.Gln7Ter
Unknown
GEN474R067
stop_gained
c.19C>T
p.Gln7Ter
Familial
Maternal
GEN474R068
stop_gained
c.19C>T
p.Gln7Ter
Unknown
GEN474R069
frameshift_variant
c.6789dup
p.Val2264CysfsTer61
Unknown
GEN474R070
frameshift_variant
c.4457_4460del
p.Lys1486ArgfsTer28
Unknown
GEN474R071
missense_variant
c.6299A>G
p.Asp2100Gly
Unknown
GEN474R072
missense_variant
c.2687C>T
p.Thr896Ile
De novo
GEN474R073
frameshift_variant
c.1717_1720del
p.Phe573ValfsTer5
De novo
GEN474R074
stop_gained
c.3439C>T
p.Gln1147Ter
De novo
GEN474R075
missense_variant
c.5152G>A
p.Glu1718Lys
De novo
GEN474R076
missense_variant
c.3769A>T
p.Asn1257Tyr
Familial
Paternal
GEN474R077
stop_gained
c.3964C>T
p.Arg1322Ter
De novo
GEN474R078
missense_variant
c.97G>A
p.Glu33Lys
Familial
Maternal
GEN474R079
missense_variant
c.7624G>A
p.Glu2542Lys
De novo
GEN474R080
missense_variant
c.6753C>G
p.Asp2251Glu
De novo
GEN474R081
stop_gained
c.-98C>T
Familial
Paternal
Multiplex
GEN474R082
missense_variant
c.1552T>C
p.Ser518Pro
Familial
Maternal
Simplex
GEN474R083
missense_variant
c.6299A>G
p.Asp2100Gly
Unknown
GEN474R084
missense_variant
c.4120A>G
p.Ser1374Gly
Unknown
No Common Variants Available
3
Deletion-Duplication
17
No Animal Model Data Available
Summary Statistics:
Total Interactions: 26
Total Publications: 10
Show all nodes
Hide non-ASD
Interactor Symbol
Interactor Name
Interactor Organism
Entrez ID
Uniprot ID
Interaction Type
Evidence
Reference
ARHGEF10
Rho guanine nucleotide exchange factor (GEF) 10
9639
O15013
IP; LC-MS/MS
Huttlin EL , et al. 2015
ARX
aristaless related homeobox
170302
Q96QS3
Y2H
Sakai Y , et al. 2011
ATXN1
ataxin 1
6310
P54253
Y2H; IP/WB
Lim J , et al. 2006
AURKA
aurora kinase A
6790
O14965
IP; LC-MS/MS
Huttlin EL , et al. 2015
CHD8
chromodomain helicase DNA binding protein 8
57680
Q9HCK8
CHIP-seq
Cotney J , et al. 2015
CIC
capicua transcriptional repressor
23152
Q96RK0
Y2H; IP/WB
Lim J , et al. 2006
CLK2
CDC-like kinase 2
1196
P49760
IP; LC-MS/MS
Huttlin EL , et al. 2015
CPNE7
copine VII
27132
Q9UBL6
IP; LC-MS/MS
Huttlin EL , et al. 2015
ELAVL1
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R)
1994
Q15717
RNP IP
Abdelmohsen K , et al. 2009
F9
Coagulation factor IX
2158
P00740
IP; LC-MS/MS
Huttlin EL , et al. 2015
FMR1
fragile X mental retardation 1
2332
G8JLE9
PAR-CLIP; RNA immunoprecipitation (RIP)
Ascano M Jr , et al. 2012
HNRPLL
heterogeneous nuclear ribonucleoprotein L-like
92906
A8K894
IP; LC-MS/MS
Huttlin EL , et al. 2015
JMJD6
jumonji domain containing 6
23210
Q6NYC1
IP; LC-MS/MS
Huttlin EL , et al. 2015
NXF2
Nuclear RNA export factor 2
56001
Q9GZY0
IP; LC-MS/MS
Huttlin EL , et al. 2015
PIP4K2A
phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
5305
P48426
IP; LC-MS/MS
Huttlin EL , et al. 2015
RSBN1
round spermatid basic protein 1
54665
Q5VWQ0
IP; LC-MS/MS
Huttlin EL , et al. 2015
SCARA3
Scavenger receptor class A member 3
51435
Q6AZY7-2
IP; LC-MS/MS
Huttlin EL , et al. 2015
SHANK3
SH3 and multiple ankyrin repeat domains 3
85358
Q9BYB0
Y2H
Sakai Y , et al. 2011
SIAH2
siah E3 ubiquitin protein ligase 2
6478
O43255
Y2H
Wang J , et al. 2011
SMAD3
SMAD family member 3
4088
P84022
Y2H; IP/WB
Wang J , et al. 2011
TOP3B
topoisomerase (DNA) III beta
8940
O95985
HITS-CLIP
Xu D , et al. 2013
TUBA1A
tubulin, alpha 1A
7846
Q71U36
IP/WB; in vitro binding assay; in vitro methylation assay
Park IY , et al. 2016
UBC
ubiquitin C
7316
P63279
LC-MS/MS
Danielsen JM , et al. 2010
WDR37
WD repeat domain 37
22884
Q9Y2I8
IP; LC-MS/MS
Huttlin EL , et al. 2015