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Relevance to Autism

Li et al., 2023 determined that a de novo splice-region variant in the SENP6 gene originally identified in an ASD proband from the Autism Sequencing Consortium in Satterstrom et al., 2020 was a non-canonical splicing variant; subsequent functional analysis by minigene splicing assays demonstrated that this variant resulted in skipping of exon 18. Additional de novo variants in the SENP6 gene, including a de novo frameshift variant, have been identified in ASD probands (Zhou et al., 2022; Trost et al., 2022).

Molecular Function

Ubiquitin-like molecules (UBLs), such as SUMO1, are structurally related to ubiquitin and can be ligated to target proteins in a similar manner as ubiquitin. However, covalent attachment of UBLs does not result in degradation of the modified proteins. SUMO1 modification is implicated in the targeting of RANGAP1 to the nuclear pore complex, as well as in stabilization of I-kappa-B-alpha (NFKBIA) from degradation by the 26S proteasome. Like ubiquitin, UBLs are synthesized as precursor proteins, with 1 or more amino acids following the C-terminal glycine-glycine residues of the mature UBL protein. Thus, the tail sequences of the UBL precursors need to be removed by UBL-specific proteases, such as SENP6, prior to their conjugation to target proteins. SENPs also display isopeptidase activity for deconjugation of SUMO-conjugated substrates

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD
Support
Genomic architecture of autism from comprehensive whole-genome sequence annotation
ASD
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1430R001 
 splice_region_variant 
 c.2196-3C>A 
  
 De novo 
  
  
 GEN1430R002 
 synonymous_variant 
 c.1896G>A 
 p.Gln632= 
 De novo 
  
  
 GEN1430R003 
 frameshift_variant 
 c.605del 
 p.Lys202ArgfsTer27 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
6
Deletion
 2
 
6
Deletion
 2
 
6
Deletion
 1
 
6
Deletion
 1
 
6
Deletion
 6
 
6
Deletion
 1
 
6
Deletion
 1
 
6
Deletion-Duplication
 25
 

No Animal Model Data Available

 

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