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Relevance to Autism

Whole-exome sequencing in a cohort of 168 Chinese ASD probands in Liu et al., 2022 identified two male probands with maternally-inherited variants in the SCGN gene; one of these variants was a missense variant (p.Arg79Trp) that was experimentally shown to fail to rescue neuronal morphology defects in scgn-deficient zebrafish. In the same report, deletion of Scgn in zebrafish or mice resulted in autism-like behaviors and impaired brain development, as well as disrupted oxytocin signalling and an abnormal activation in inflammation. A de novo loss-of-function variant in the SCGN gene was identified in a male ASD proband from a multiplex family from the MSSNG cohort (Zhou et al., 2022). Reduced plasma secretagogin (SCGN) levels had previously been reported in children with ASD compared to age- and gender-matched healthy controls in Alhowikan et al., 2017.

Molecular Function

he encoded protein is a secreted calcium-binding protein which is found in the cytoplasm. It is related to calbindin D-28K and calretinin. This protein is thought to be involved in KCL-stimulated calcium flux and cell proliferation.

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References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
ASD
DD
Support
Integrating de novo and inherited variants in 42
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1384R001 
 missense_variant 
 c.235C>T 
 p.Arg79Trp 
 Familial 
 Maternal 
  
 GEN1384R002 
 splice_site_variant 
 c.702+2T>G 
  
 Familial 
 Maternal 
  
 GEN1384R003 
 frameshift_variant 
 c.146del 
 p.Gly49ValfsTer7 
 De novo 
  
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
6
Deletion
 1
 
6
Deletion
 1
 

Model Summary

Scgn homozygous mutant and knockdown models show a decrease in oxytocin signaling. The homozygous knockout mouse shows an increase in pro-inflammatory cytokines. The knockdown models shows ASD-like behavioral phenotypes, such as decrease in social memory and an increase in repetitive behaviors. Oxytocin treatment restores the behavioral phenotypes.

References

Type
Title
Author, Year

M_SCGN_1_KO_HM

Model Type: Genetic
Model Genotype: Homozygous
Mutation: Scgn deficient animals were generated by multiple zygote injection of custom synthetic sgRNA and Cas9 mRNA, resulting in a knockout allele (Scgn^em1Ezb, MGI:6711490). Mice were generated on a C57BL/6 background and resulting progeny was characterized for potential targeting of the Scgn allele by PCR amplification of a 214 bp region flanking the site of sgRNA cleavage. Homozygous mice express a truncated transcript skipping exon 3 of the gene.
Allele Type: Knockout
Strain of Origin: C57BL/6
Genetic Background: C57BL/6
ES Cell Line:
Mutant ES Cell Line:
Model Source: UT Southwestern transgenic core, Ezra Burstein lab

M_SCGN_2_KD

Model Type: Genetic
Model Genotype: Wildtype
Mutation: The shRNA was applied to knockdown Scgn. Designed AAV delivers shRNA targeting mouse Scgn or shControl-GFP. Mice were anesthetized with isoflurane and then fastened to the stereotaxic device. shControl and shScgn AAVs were injected into the hypothalamus paraventricular nucleus (PVN) bilateral through an automatic microinjection instrument.
Allele Type: Knockdown
Strain of Origin: Unreported
Genetic Background: Unreported
ES Cell Line:
Mutant ES Cell Line:
Model Source: Beijing Syngentech Co., LTD

M_SCGN_1_KO_HM

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Microglial number1
Increased
Description: Scgn knockout mice exhibited a more dense distribution and greater number of IBA1+ microglia in the paraventricular nucleus relative to that of Scgn wildtype mice.
Exp Paradigm: IBA1
 Immunohistochemistry
 unreported
Neuronal number: oxytocin expressing1
Decreased
Description: The hypothalamus of Scgn knockout mice exhibited decreased expression of many genes in the oxytocin pathway, such as Oxt, Ppp3cb, and Plcb3, compared to wildtype mice.
Exp Paradigm: Oxt
 RNA sequencing
 unreported
Neurotransmitter release: neurohypophysial1
Decreased
Description: The serum of Scgn knockout mice exhibited a decrease in levels of oxytocin by approximately 30% compared to age-matched wildtype mice.
Exp Paradigm: Oxytocin
 ELISA
 unreported
Cytokine levels: pro-inflammatory1
Increased
Description: The serum of Scgn knockout mice exhibited elevated IL-6 and IL-1β protein levels compared to wildtype mice.
Exp Paradigm: IL-6, IL-1beta
 ELISA
 unreported
Cytokine levels: pro-inflammatory1
Increased
Description: The hypothalamus of Scgn knockout mice exhibited up-regulated levels of critical pro-inflammatory genes, including IL-6 and TNF, compared to wildtype mice.
Exp Paradigm: IL-6, TNF
 Quantitative PCR (qRT-PCR)
 unreported
Metabolite levels: neurometabolites1
Abnormal
Description: The serum metabolome of Scgn knockout mice displayed disrupted oxytocin signaling and the neuroactive ligand-receptor interaction pathway relative to wildtype controls.
Exp Paradigm: LC-ESI-MS/MS system
 Liquid chromatography-mass spectrometry (LC-MS)
 unreported
Differential gene expression1
Abnormal
Description: The hypothalamus of Scgn knockout mice exhibited an abnormal gene expression profile, with changes in pathways such as neurotransmitter receptor activity as well as multiple immune regulatory pathways, including inflammatory and innate immune response.
 RNA sequencing
 unreported
Hormone levels1
 No change
 ELISA
 unreported
 Not Reported:

M_SCGN_2_KD

Category
Entity
Quantity
Experimental Paradigm
Age at Testing
Neurotransmitter release: neurohypophysial1
Decreased
Description: shScgn mice displayed a reduction of more than half of the plasma oxytocin levels in the paraventricular nucleus compared to shControl mice.
Exp Paradigm: Oxytocin
 ELISA
 unreported
Self grooming1
Increased
Description: shScgn mice spent more time self-grooming than shControl mice, as shown by an average of 100 s for shScgn mice and 40 s for shControl mice.
 Grooming behavior assessments
 unreported
Repetitive digging1
Increased
Description: shScgn mice embedded a larger number of marbles compared to shControl mice, with an average of 11 and 5 marbles, respectively.
 Marble-burying test
 unreported
Social memory1
Decreased
Description: shControl mice spent 52% of their time exploring the S2 stranger and relatively more time sniffing S2 compared to shScgn mice, which spent 30% of the time with S2 and relatively less time sniffing S2. Overall, shScgn displayed a reversed preference index in both chamber and sniffing time, preferring the S1 familiar mouse over the S2 stranger.
 Three-chamber social approach test
 unreported
Targeted expression1
Decreased
Description: shScgn mice displayed a depletion of the majority of Scgn expression in the paraventricular nucleus compared to wildtype mice.
 Quantitative PCR (qRT-PCR)
 unreported
Social approach1
 No change
 Three-chamber social approach test
 unreported
 Not Reported:

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