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Relevance to Autism

Linkage analysis and follow-up exome sequencing in seven large families with ASD identified a missense variant in the SAMD11 gene (rs200195897) that was transmitted to four affected individuals in one family (Chapman et al., 2015). Subsequent analysis of whole-genome sequencing data from individuals with ASD and family members in the MSSNG database replicated transmission of rs200195897 to four affected individuals in three additional families; this variant was also present in three singleton affected individuals and no unaffected individuals other than transmitting parents (Chapman et al., 2018).

Molecular Function

May play a role in photoreceptor development.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Whole exome sequencing in extended families with autism spectrum disorder implicates four candidate genes.
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Recent Recommendation
Replication of a rare risk haplotype on 1p36.33 for autism spectrum disorder.
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1050R001 
 missense_variant 
 c.877C>G 
 p.Pro293Ala 
 Familial 
  
 Extended multiplex 
 GEN1050R002 
 missense_variant 
 c.877C>G 
 p.Pro293Ala 
 Familial 
 Paternal 
 Multiplex 
 GEN1050R003 
 missense_variant 
 c.877C>G 
 p.Pro293Ala 
 Familial 
 Paternal 
 Simplex 
 GEN1050R004 
 missense_variant 
 c.877C>G 
 p.Pro293Ala 
 Familial 
 Maternal 
 Simplex 
 GEN1050R005 
 missense_variant 
 c.877C>G 
 p.Pro293Ala 
 Unknown 
  
 Simplex 
 GEN1050R006 
 missense_variant 
 c.877C>G 
 p.Pro293Ala 
 Unknown 
  
 Simplex 
 GEN1050R007 
 missense_variant 
 c.877C>G 
 p.Pro293Ala 
 Unknown 
  
 Multiplex 
 GEN1050R008 
 missense_variant 
 c.683C>T 
 p.Pro228Leu 
 De novo 
  
  
 GEN1050R009 
 synonymous_variant 
 c.1605A>T 
 p.Pro535%3D 
 De novo 
  
 Simplex 
 GEN1050R010 
 frameshift_variant 
 c.1890del 
 p.Asp632ThrfsTer57 
 De novo 
  
  
 GEN1050R011 
 splice_site_variant 
 c.2181+2T>C 
  
 Familial 
 Paternal 
 Multiplex 

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
1
Deletion-Duplication
 26
 
1
Duplication
 1
 
1
Deletion
 4
 
1
Deletion
 6
 
1
Deletion
 4
 
1
Deletion
 17
 

No Animal Model Data Available

 

No Interactions Available
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